CK934372

Overview
NameCK934372
Unique NameCK934372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2750 contig Csv1_Contig2750:26..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.471e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+             DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.471e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+             DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.471e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+             DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.389e-46
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MS+FD  +            EDSGAG+K+YVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.389e-46
Identity = 92/115 (80.00%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+             DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.389e-46
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD ++QV            EDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 90/113 (79.65%), Postives = 97/113 (85.84%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MS+ D QV            EDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.313e-44
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MS+ D QV            EDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.896e-38
Identity = 79/113 (69.91%), Postives = 88/113 (77.88%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXXXEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            M D DIQ+             D+   +KEYVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CK934372 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.985e-29
Identity = 54/89 (60.67%), Postives = 75/89 (84.27%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CK934372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST2.471e-4680.87Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ2.471e-4680.87Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI2.471e-4680.87Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_SALBA9.389e-4678.76Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_MAIZE9.389e-4680.00Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI12_ARATH9.389e-4679.65Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH4.660e-4579.65Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL2.313e-4478.76Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR1.896e-3869.91Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG7.985e-2960.67Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934372 ID=CK934372; Name=CK934372; organism=Citrus sinensis; type=EST; length=577bp
GGGGGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATCT
TATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGTC
TGAGCATTCCGGTTGTTGGGCCCCTTGCATCAACTGAGGTTCATGTCTGA
TTTTGATATCCAGGTNNNTGCTGCCTTTGACCCGTTTGCTGATGCAAAGG
CTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCAG
CAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAGA
ATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGGAATTTTGCTGCA
ATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCAA
GGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGATTGT
GAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAAACAGCAACTTCC
GTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAGTGCAGAACATGC
TATTGATACTATTAAAAAAAAAAAAAA
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