CK934455

Overview
NameCK934455
Unique NameCK934455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934455_ssr293 microsatellite CK934455_ssr293:293..307. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK934455 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 72/228 (31.58%), Postives = 96/228 (42.11%), Query Frame = 2 
Query:  212 MNPTSFTDLLTSSAPADHAQLHXXXXXXXXXXXRGLSDRIAERTGSGVPKFKSIQXXXXXXXXXXXXXXXXXXXXXAGLSPAELLDSPVLLNTSNVLPSPTTGAF--QSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQXNQPWNYQESTXXDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRS 889
            M+ TSFTDLL SS    +                       ERTGSG+PKFK+ Q                        + ++ LDSP+LL++S+ L SPTTG F  Q FN  +N              N SDF +  Q++P+  SS  Q  + +  Q+       +                     FG  +  +      S+ S+DGY WRKYGQKQVK SENPRS
Sbjct:    1 MSSTSFTDLLGSSGVDCYED-----DEDLRVSGSSFGGYYPERTGSGLPKFKTAQPPPLPISQSSH-----------NFTFSDYLDSPLLLSSSHSLISPTTGTFPLQGFNGTTN--------------NHSDFPWQLQSQPSNASSALQ--ETYGVQDHEKKQEMIPNEIATQNNNQ---------SFGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENPRS 187
The following BLAST results are available for this feature:
BLAST of CK934455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRK25_ARATH3.399e-1631.58Probable WRKY transcription factor 25 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004258_H12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934455 ID=CK934455; Name=CK934455; organism=Citrus sinensis; type=EST; length=889bp
GGGGGTTCTTCCTCTTCTTTTCTTCCTTCCAAATTATTTTTCCCTTTTCA
ATTTCTCAAAGCTCTCCCTGTCTATCTCTTAAAAAGCTCTTTGGGTCAAT
CATACTCACTTCTCAATTTTAATGGCCTCTTCTTCTGGTAACTTAGACAC
TTTAACAAACTCACACCATCACCACCCAACAAACAACTTCACTTTCTCAA
CACATCCCTTCATGAACCCCACTTCTTTCACTGATCTTCTTACATCTTCC
GCACCGGCCGATCATGCTCAACTTCATAGCAATAACAGCAACACAACAAC
AACAACAACTCGTGGGTTGTCGGATCGTATAGCTGAGAGAACCGGGTCCG
GTGTGCCGAAATTCAAGTCTATCCAGCCTCCTTCATTGCCCATCTCCCCT
CCTTCACTTTTCTCTCCTTCTTCTTACTTCTCTATTCCTGCTGGCCTCAG
CCCTGCTGAGCTCTTGGACTCCCCTGTTTTGCTTAACACTTCCAACGTTC
TGCCATCTCCAACAACTGGAGCATTTCAATCTTTCAACTGGAAGAGCAAT
ATTGGCAGTAACGACCAGCAAAGTGTTAAACAGGAAAACAAAAATCAATC
TGATTTCTCATTTCCAACACAAACAAGGCCCAACACAACATCATCAATTG
CACAGCANAACCAACCATGGAATTATCAGGAATCCACAAANNNAGATGTG
AAATTGGCACAGAGTTTTTCAACAACTTTGCAAAGTAACAATCAGAGCAA
CAGTGGGTTCCAATCAGATTTTGGAAACTACCAACACCAACAATCTCAGC
CCATTAGAGAGAGTAAAAAATCTGATGATGGATATAATTGGAGAAAATAT
GGGCAAAAACAAGTCAAAGGAAGTGAAAATCCAAGAAGT
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