CK934532

Overview
NameCK934532
Unique NameCK934532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 2.045e-114
Identity = 201/240 (83.75%), Postives = 214/240 (89.17%), Query Frame = 2
Query:   32 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 748
            MASNTLMSCGI     PS LSS+KSKF  A+ +   A N  S+++MSADWMPG+PRP YLDGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVE+QRSMEKD EKKKYPGGAFDPLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVII
Sbjct:    1 MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.619e-103
Identity = 175/238 (73.53%), Postives = 199/238 (83.61%), Query Frame = 2
Query:   35 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 748
            +S+ L SC  +    PS+L+ S     + +   A A  + +  MSA+W PG+PRP +LDGS+PGDFGFDPL L  VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA+P GQATYLGNPVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct:    3 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.080e-38
Identity = 108/291 (37.11%), Postives = 149/291 (51.20%), Query Frame = 2
Query:   20 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAV----SLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 739
            S+   A++++M   +A    P       S  FTAV       AA   ++K  ++ D   W PG   P +LDGS  GD+GFDP  LG+  E L+                                           R++E ELIH RWAMLA  G L  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E+QR+ E D EK+ YPGG F DPLG + DP+K  + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:    5 SAAAAAASSIMGTRVAPGIHPG------SGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.451e-37
Identity = 104/283 (36.75%), Postives = 140/283 (49.47%), Query Frame = 2
Query:   38 SNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 739
            S    +  I  T   S +SS+ S+F           A+ K A +       W PG   P YLDGS  GD+GFDP  LG+  E                                            L+R++E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E+QR+ E D EK+ YPGG F DPLG + DP K  + ++ EIK+ RLA++ F+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:    5 STAAAASSIMGTRVVSDISSNSSRFTARFGF-GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 282          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.451e-37
Identity = 95/243 (39.09%), Postives = 131/243 (53.91%), Query Frame = 2
Query:   71 TAFPSVLSSSKSKF-----FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733
            T+ P  L+ S  +      FT++   A  ++    A   +W+PG   P YL GS  GD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE       +   EW     G+  Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL F+      +E K KE+ NGRLA+LAF+GF VQ +   G GP ENL  HL+DPWHN I
Sbjct:   17 TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWHNTI 246          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.230e-35
Identity = 85/191 (44.50%), Postives = 111/191 (58.12%), Query Frame = 2
Query:  197 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNWVQAQEW-----AAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR-SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 745
            P YL+G   GD+G+DP  LG+ PEN  +Y+  ELIH RWAML   G ++PEAL     N      W       + G    Y G  +P   L   +V E + +   EY R +   D E K +PGG FDPLG +KDP++    KVKEIKNGRLA+ A +GF + Q+   G GP+ENLA HL+DP+ NN+  VI
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSDPFGNNLLTVI 270          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 92/236 (38.98%), Postives = 128/236 (54.24%), Query Frame = 2
Query:   89 LSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733
            L  S  K    V+  P   + ++ + + A   +W+PG   P YL GS PGD GFDPL L E PENL  + ++EL++ RWAML V G+L+PE       +   +W A   G+  Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL F+       E K KEI NGRLA+LAF+GF +Q +   G GP +NL  H++DPWHN I
Sbjct:   23 LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 245          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.195e-35
Identity = 100/262 (38.17%), Postives = 131/262 (50.00%), Query Frame = 2
Query:   20 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733
            SSP    N      I  T   S L   + +     + P A +AT+   ++AD     W PG   PP+LDGS PGDFGFDPL L   PE+L   +++EL+HCRWAML   GI +PE L     +    W     G+  Y  +        T+ ++E + I + E +R         +  DP             YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   Q   Y GTGP++NL  HLADP H  I
Sbjct:   16 SSPSSRRNG----SIVGTTKASFLGGRRLRVSKYSTTPTARSATT-VCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSW--YTAGEQEYFTDTT------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATI 263          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 80/195 (41.03%), Postives = 109/195 (55.90%), Query Frame = 2
Query:  176 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733
            W+PG   P YLDGS  GD GFDPL L E PE+L  + ++++++ RWAML V G+L+PE L     + A EW  +PG +  +  +        +   +E      ++   S+ +DP  K          YPG  F+PL F+       E K KE+ NGRLA+LAF+GF VQ + + G GP ENL  HLADPWHN I
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-----LENKEKELANGRLAMLAFLGFLVQHNVH-GKGPFENLQQHLADPWHNTI 224          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.664e-34
Identity = 90/195 (46.15%), Postives = 109/195 (55.90%), Query Frame = 2
Query:  185 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            GEP P YL G  PGD+G+D   L   PE   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R   + P    E   YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
The following BLAST results are available for this feature:
BLAST of CK934532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB11_SOLLC2.045e-11483.75Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.619e-10373.53Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4A_ARATH9.080e-3837.11Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.451e-3736.75Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH3.451e-3739.09Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_ARATH3.230e-3544.50Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB24_PEA4.218e-3538.98Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_SOLLC7.195e-3538.17Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB120_HORVU1.227e-3441.03Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB21_SINAL4.664e-3446.15Chlorophyll a-b binding protein 1, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004229_H12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934532 ID=CK934532; Name=CK934532; organism=Citrus sinensis; type=EST; length=750bp
GGGGGCCCACCCCTCACACAGCTCTCCCAAAATGGCTTCCAACACTCTGA
TGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCATCTTCT
AAATCCAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAATGCAAC
CTCGAAATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCCGGCCGC
CTTATCTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCACTTCGG
CTTGGCGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCAT
TCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGG
CATTGGGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCT
GGAGGACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCC
CACAATTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGTACCAAC
GCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTC
GACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGT
CAAGGAGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCT
GCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCA
ACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCC
back to top