CK934600

Overview
NameCK934600
Unique NameCK934600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934600_ssr562 microsatellite CK934600_ssr562:562..573. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1839 contig Csv1_Contig1839:3..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: BABL_LILLO (Chemocyanin OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.667e-30
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   67 AQGRCSASQATTVAATLIVLLFLRFHSTEATST-FTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYLICSIPGHCEAGLKLAVDAS 447
            AQG  SA +A  +    +VL+FL F+   A S  +TVGD  GWT+    W  GK F+AGD L+F Y+ ++HNV  V    Y+SC ASP S+ F SG D+I LS+G NY ICS+PGHC+ GLK+AV A+
Sbjct:    2 AQGSGSAERALVLG---VVLVFLVFNCEVAESVVYTVGDGGGWTFGTSGWPAGKTFRAGDVLVFKYNPAVHNVVSVPAGGYKSCTASPGSRVFKSGDDRITLSRGTNYFICSVPGHCQGGLKIAVTAA 126          
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: BABL_ARATH (Basic blue protein OS=Arabidopsis thaliana GN=At2g02850 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.703e-27
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   67 AQGRCSASQATTVAATLIVLLFLRFHSTEA-TSTFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYLICSIPGHCEAGLKLAVDA 444
            A+GR SAS +     TL+ +  L   +     +T+TVGD+  WT+N   W  GK F+AGD L+FNY+  +HNV  VD  +Y +C+    +K ++SGKD+I LSKG+N+ IC+ P HCE+ +K+AV A
Sbjct:    2 AKGRGSASWSARAIVTLMAVSVLLLQADYVQAATYTVGDSGIWTFNAVGWPKGKHFRAGDVLVFNYNPRMHNVVKVDSGSYNNCKTPTGAKPYTSGKDRITLSKGQNFFICNFPNHCESDMKIAVTA 128          
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: BABL_CUCSA (Basic blue protein OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.156e-26
Identity = 46/95 (48.42%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  160 STFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYLICSIPGHCEAGLKLAVDA 444
            + + VG + GWT+N +SW  GK+F+AGD L+FNY+  +HNV VV+   + +C     +K ++SG+DQIKL KG++Y IC+ PGHC++G+K+AV+A
Sbjct:    1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPKGQSYFICNFPGHCQSGMKIAVNA 95          
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  172 VGDTSGWT----YNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYLICSIPGHCEAGLKLAV 438
            VGD++GWT    Y+   WA+  +F  GD+L+FNY+   HNV  VD   ++SC +S  + S++SG D I L + G  Y +C IPGHC+ G K+ +
Sbjct:    6 VGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEI 99          
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.307e-16
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  160 STFTVGDTSGWTY--NIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYLICSIPGHCEAGLKLAV 438
            + +TVGDTSGW    +  +WA+ K F  GD+L+FNY A  H V  V  ++Y+SC +  +  + S+G   I L K G++Y IC +PGH   G+KL++
Sbjct:   25 TVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSI 120          
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: STEL_RHUVE (Stellacyanin OS=Rhus vernicifera PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  160 STFTVGDTSGWTYNI-------QSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKL-SKGRNYLICSIPGHCEAGLKLAVDAS 447
            + +TVGD++GW             WA+ K F  GD L+F YD   HNV  V   NYQSC  +    S+++G ++I L + G+ Y IC +P HC+ G K+ ++ +
Sbjct:    1 TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINVT 104          
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: BCB2_ARATH (Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 50/116 (43.10%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  103 VAATLIVLLFLRFHSTEATSTFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKL-SKGRNYLICSIPGHC--EAGLKLAVD 441
            VAA   +LL L         T+T+  T+G  Y+   WA GK F+ GD L F Y +S H V VVD   Y  C AS ++++ S G  +I L + G NY ICS PGHC    G+KLAV+
Sbjct:   11 VAAATALLLVLTIVPGAVAVTYTIEWTTGVDYS--GWATGKTFRVGDILEFKYGSS-HTVDVVDKAGYDGCDASSSTENHSDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAVN 123          
BLAST of CK934600 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  100 TVAATLIVLLFLRFHSTEATST--FTVGDTSGWTYNIQS--WANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFS--SGKDQIKLSKGRNYLICSIPGHCEAGLKLAV 438
            TV  T +VL FL        +   +TVG+   W  NI    WA GK F  GD L F +D + HN+  V+  +Y+ C A    ++++  +G+D + L++ ++Y +    G C  G+KL+V
Sbjct:    5 TVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSV 123          
The following BLAST results are available for this feature:
BLAST of CK934600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BABL_LILLO3.667e-3050.00Chemocyanin OS=Lilium longiflorum PE=1 SV=1[more]
BABL_ARATH1.703e-2744.09Basic blue protein OS=Arabidopsis thaliana GN=At2g... [more]
BABL_CUCSA7.156e-2648.42Basic blue protein OS=Cucumis sativus PE=1 SV=1[more]
MAVI_CUCPE1.598e-1742.55Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
BCP_PEA2.307e-1641.67Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
STEL_RHUVE3.332e-1536.54Stellacyanin OS=Rhus vernicifera PE=1 SV=1[more]
BCB2_ARATH7.423e-1543.10Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 ... [more]
LAML_ARATH8.493e-1132.77Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004229_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934600 ID=CK934600; Name=CK934600; organism=Citrus sinensis; type=EST; length=614bp
GGGGGTGAACCCCATTTATAANNNTAAAGAGTTTCTTCTACCGTCACTAT
ACGAATGGCTCGCCAGGCCCAGGGAAGATGCAGTGCAAGCCAAGCCACAA
CTGTTGCAGCCACCTTGATTGTTTTGCTCTTTCTTCGGTTTCATAGTACT
GAGGCAACCAGTACTTTCACCGTCGGTGACACTTCAGGCTGGACCTACAA
CATTCAAAGTTGGGCCAATGGCAAACAGTTTAAGGCCGGCGACACACTCA
TTTTCAACTATGACGCATCGATTCACAATGTAGCAGTTGTTGATGGGAAT
AACTACCAGAGCTGCAGGGCTTCACCAACCTCGAAGAGTTTCTCCAGCGG
AAAAGATCAAATCAAACTATCAAAGGGACGTAACTATCTCATTTGTAGTA
TCCCTGGCCATTGCGAAGCTGGCCTGAAGCTTGCTGTTGATGCTTCTTGA
GCTACAATTATCACTGTTGCTTTAATTAATCTCCAAATTCTCAAGAAAAA
GCTGGCTTCGATGTCTTCATGAACTGCTTAATATTGCACAAAGCTGAGGA
TGGTTTAATAAAATAATAATAATCATAATTAGTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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