CK934616

Overview
NameCK934616
Unique NameCK934616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1711 contig Csv1_Contig1711:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.788e-43
Identity = 78/162 (48.15%), Postives = 119/162 (73.46%), Query Frame = 2
Query:    5 FRSGGIVVKG-RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYP 487
            ++  GI  +G   YG+++IRVDGND  AVY   + AR++A+ E+ PVL+EA+TYRVGHHSTSDDS++YRT++EI  WK  ++P++R RN++  +GWWS+ +E E  ++ +  + +++  AEK  KP+I E+F+DVYD P  NL EQ+K+L E ++ YP +YP
Sbjct:  267 YKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLYPDEYP 428          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.455e-42
Identity = 77/163 (47.24%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    5 FRSGGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 493
            +R  GI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  PV+R R+++  QGWW E++E   R   +K++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +Q Y + YP D
Sbjct:  279 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 441          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.455e-42
Identity = 76/163 (46.63%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    5 FRSGGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 493
            +R  GI  +G  YGI+SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R ++  QGWW E++E   R   +K++++A + AE+  KP  + LFSDVY   P+ L  Q++ L   +Q Y + YP D
Sbjct:  276 YRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYPLD 438          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.469e-42
Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = 2
Query:    5 FRSGGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 493
            +R  GI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R ++  QGWW E++E   R   +K++++A + AE+  KP  + LFSDVY   P+ L  Q++ L   +Q Y + YP D
Sbjct:  275 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYPLD 437          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.143e-42
Identity = 75/163 (46.01%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    5 FRSGGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 493
            +R  GI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R+++  QGWW E++E   R   ++++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +Q Y + YP D
Sbjct:  279 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 441          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.218e-41
Identity = 75/163 (46.01%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    5 FRSGGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 493
            +R  GI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R+++  QGWW E++E   R   +K++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +Q Y + YP +
Sbjct:  279 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLE 441          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.630e-41
Identity = 73/163 (44.79%), Postives = 111/163 (68.10%), Query Frame = 2
Query:    5 FRSGGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 493
            +R  GI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R+ ++ +GWW +++E   R   +K++++A + AE+  KP  + +FSDVY   P+ L +Q++ L   +Q Y + YP D
Sbjct:  289 YRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 451          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 2
Query:   29 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 457
            K  + GI  I+VDG DALAVY A   ARE A++ + P ++E LTYR G H+ + DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K ++  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  224 KAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYEIYKE 366          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 2
Query:   29 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 457
            K  + GI  I+VDG DALAVY A   ARE A++ + P ++E LTYR G H+ + DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K ++  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  224 KAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYEIYKE 366          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 2
Query:   29 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 457
            K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+ + DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  224 KAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
The following BLAST results are available for this feature:
BLAST of CK934616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ODBA_DICDI3.788e-4348.152-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR2.455e-4247.242-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE2.455e-4246.632-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT5.469e-4246.632-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN7.143e-4246.012-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA1.218e-4146.012-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN4.630e-4144.792-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_STAES4.207e-2643.75Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAEQ4.207e-2643.75Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAW4.207e-2643.75Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934616 ID=CK934616; Name=CK934616; organism=Citrus sinensis; type=EST; length=704bp
GGGATTTCGAAGCGGTGGTATTGTTGTTAAGGGTCGTGCATATGGTATCC
GAAGCATACGAGTAGATGGAAATGATGCACTCGCTGTTTATACCGCAGTT
CAGGCAGCTCGTGAAATGGCTATCAGTGAAAAGAGACCTGTGTTAGTAGA
GGCCCTTACATATCGAGTAGGACATCACTCAACCTCGGATGATTCCACCA
AATACCGAACACTTGATGAAATCGAGTACTGGAAAACAGAACGAAGTCCT
GTCAATAGATTTAGGAATTGGGTGGAAAGGCAAGGCTGGTGGAGTGAGCA
AGAAGAAACCGAGCTTCGAAGTAGCATCAAGAAACAGTTGTTGCAAGCAA
TTCAAGTTGCAGAGAAAACAGAAAAGCCGGCGATTACAGAACTGTTCTCC
GACGTATATGATGTTCCCCCATCAAACCTTGCTGAGCAAGAGAAACAGCT
GAAAGAAATTATCCAAAAATATCCACAAGACTATCCCACTGATGTTCCTG
TATAGATTTCACGTGGCTACTTCAATAAAATGTGTAGAATAAAGGGGGGA
AACGGAAAGATAAAAAATAAAACTCCTGAAAACTCCATATAAATGAAAAA
TGTAGCGTCAATAAGTTTCTACATGCCATGTACATTTTGATAGTAATAAA
GCAATCTATACGTAATTATAGTATCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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