CK934622

Overview
NameCK934622
Unique NameCK934622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:172..610. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_CITSI (Photosystem II reaction center protein K OS=Citrus sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.914e-28
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPV+PVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_JASNU (Photosystem II reaction center protein K OS=Jasminum nudiflorum GN=psbK PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.855e-25
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIFSL+ ICLNSALYSSSF F KLPEAYAFLNPIVDVMPV+PV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLISICLNSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_VITVI (Photosystem II reaction center protein K OS=Vitis vinifera GN=psbK PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.340e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIFSL+ ICLNSALYSS+F FAKLPEAYAFLNPIVDVMPV+P+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSNFFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_MORIN (Photosystem II reaction center protein K OS=Morus indica GN=psbK PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.750e-24
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIFSL+ ICLNS LYSSSF  AKLPEAYAFLNPIVDVMPV+PVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSVLYSSSFFVAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_GOSHI (Photosystem II reaction center protein K OS=Gossypium hirsutum GN=psbK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.286e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPV+PVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_GOSBA (Photosystem II reaction center protein K OS=Gossypium barbadense GN=psbK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.286e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPV+PVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_COFAR (Photosystem II reaction center protein K OS=Coffea arabica GN=psbK PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.899e-24
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIFSL++ICLNSALYSS F F KLPEAYAFLNPI+D MPV+PV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLIWICLNSALYSSGFFFGKLPEAYAFLNPIIDFMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_PHAAO (Photosystem II reaction center protein K OS=Phalaenopsis aphrodite subsp. formosana GN=psbK PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.092e-24
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIF L+ ICLNS LYSSSF FAKLPEAYAF NPI+DVMP++PVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFCLICICLNSTLYSSSFFFAKLPEAYAFFNPIIDVMPIIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_PANGI (Photosystem II reaction center protein K OS=Panax ginseng GN=psbK PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.650e-24
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIFSL+ ICLNSALYSSS  FAKLPEAYAFLNPIVD+MPV+P+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_LIRTU (Photosystem II reaction center protein K OS=Liriodendron tulipifera GN=psbK PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.685e-24
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLNIFSL+ IC+NSAL+SSSF FAKLPEAYAF NPIVDVMPV+PVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICICINSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of CK934622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PSBK_CITSI9.914e-2898.36Photosystem II reaction center protein K OS=Citrus... [more]
PSBK_JASNU7.855e-2590.16Photosystem II reaction center protein K OS=Jasmin... [more]
PSBK_VITVI1.340e-2488.52Photosystem II reaction center protein K OS=Vitis ... [more]
PSBK_MORIN1.750e-2490.16Photosystem II reaction center protein K OS=Morus ... [more]
PSBK_GOSHI2.286e-2488.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_GOSBA2.286e-2488.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_COFAR3.899e-2485.25Photosystem II reaction center protein K OS=Coffea... [more]
PSBK_PHAAO5.092e-2485.25Photosystem II reaction center protein K OS=Phalae... [more]
PSBK_PANGI6.650e-2486.89Photosystem II reaction center protein K OS=Panax ... [more]
PSBK_LIRTU8.685e-2486.89Photosystem II reaction center protein K OS=Liriod... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934622 ID=CK934622; Name=CK934622; organism=Citrus sinensis; type=EST; length=440bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGCCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATGCCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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