CK934677

Overview
NameCK934677
Unique NameCK934677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10376 contig Csv1_Contig10376:24..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934677 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.629e-40
Identity = 94/159 (59.12%), Postives = 111/159 (69.81%), Query Frame = 1 
Query:   37 MSLSIAS--TTTITFPTEPFSKIPKSTFNGIQIRQSWSIRTPLRFATXXXXXXXXXTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 507
            +SLSIA+  T  I       +    S+F+G++I+   S R P   A          +VVMM+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+F          LTVKRERE++EGI KRLSRKLDRQWKKSIV RPPPSLKKLQ
Sbjct:    2 LSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPA--AATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQ 158
[Close]
BLAST of CK934677 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 80/155 (51.61%), Postives = 104/155 (67.10%), Query Frame = 1 
Query:   34 TMSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWSIRTPLRFATXXXXXXXXXTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLK 498
            TMSL+ AS    + P    ++ P + F  I++  + + R                 +V MAKRE+E++EIRA TTE++ EEVVDLKGELF+LRL++S R EFK+SEF          LTVKRERE+E+GINKRLSRKLDR+WK+SIVVRPPPSL+
Sbjct:    3 TMSLAAASPLA-SIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLR 156
The following BLAST results are available for this feature:
BLAST of CK934677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK29_ARATH6.629e-4059.1250S ribosomal protein L29, chloroplastic OS=Arabid... [more]
RK29_MAIZE1.581e-3351.6150S ribosomal protein L29, chloroplastic OS=Zea ma... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004228_C04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934677 ID=CK934677; Name=CK934677; organism=Citrus sinensis; type=EST; length=819bp
GGGGACTCAACGCAGCGAAGCAGCCAAAAGATGACGATGAGTCTCTCAAT
TGCTTCGACAACAACAATCACTTTCCCAACAGAGCCCTTCTCGAAAATTC
CAAAGTCAACCTTTAACGGCATCCAAATTCGTCAGTCGTGGTCTATTCGC
ACGCCGTTGCGTTTCGCGACTTCGTCGTCGGGAAGCCGTGGTTCGTCGAC
AGTGGTTATGATGGCAAAGAGAGAAGAAGAAATGAAGGAAATTAGAGCCA
AAACGACAGAGGAGATTAACGAAGAGGTCGTTGATTTGAAGGGTGAGCTG
TTTATGCTACGTCTTCAAAAATCAGTTCGCAATGAGTTCAAGTCTAGTGA
ATTTCGTCGTATGCGCAGAAGGATTGCTCGCATGCTTACTGTTAAACGTG
AAAGAGAGCTTGAGGAAGGAATTAACAAGAGATTGTCCAGAAAGCTTGAT
CGACAATGGAAGAAAAGCATTGTAGTTAGACCACCTCCATCCTTGAAGAA
GTTGCAAGAGGAAGAGGCGGCTGCAGAAGCTGAGAAGTCTGCATGAGCCA
TCTATATACACTTTGCAAATAATTTGTTTTCATTTTTTTAAGTGAAAGCT
CCTGAAATCATTGCAGATTTGCTGGCTCAAACAATTTGTGTGTAATGTTC
TGTATTGTAGGTATGTTCCTATTTCTGTATAATATTTTTAACTTTTCCTC
CCATGAAACAAACTTGAGGAAGTGTTTGTTCTATTCAAATTGAATTTCTG
TAGCTATTACCTCTTCTGATTTTTATTACAAGTTCTCCCGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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