CK934692

Overview
NameCK934692
Unique NameCK934692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6248 contig Csv1_Contig6248:409..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_ARATH (NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 7.407e-51
Identity = 93/112 (83.04%), Postives = 103/112 (91.96%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQNPKRIKSGP 340
            VGKYHLLVCGTTPCM+RGSR+IE ALL HLGVKR EVTKDGLFSVGEMECMGCCVNAPMITVADYS+GS+ YTY+Y+EDVTP+ V+EI+E LR+GEK P GTQNPKRIK GP
Sbjct:  122 VGKYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPKRIKCGP 233          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_CAEEL (Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Caenorhabditis elegans GN=F53F4.10 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.235e-22
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKY L VC TTPCM+RG+  I   + K LG+   E TKDGLF++ E+EC+G CVNAPMI + D          DY+ED+TPK V EIL+ L+ G K   G ++
Sbjct:  116 VGKYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPMIQIND----------DYFEDLTPKDVNEILDDLKAGRKPAAGPRS 209          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_RAT (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Rattus norvegicus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.116e-21
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKYH+ VC TTPCM+R S  I   L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          DYYED+TPK + EI++ LR G+   PG ++
Sbjct:  126 VGKYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------DYYEDLTPKDIEEIIDELRAGKVPKPGPRS 219          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_BOVIN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Bos taurus GN=NDUFV2 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKYH+ VC TTPCM+R S  I  A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+TPK + EI++ L+ G+   PG ++
Sbjct:  127 VGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAGKIPKPGPRS 220          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Mus musculus GN=Ndufv2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.177e-20
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKYH+ VC TTPCM+R S  I   L + LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+TPK + EI++ L+ G+   PG ++
Sbjct:  126 VGKYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAGKVPKPGPRS 219          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_PONPY (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pongo pygmaeus GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKYH+ VC TTPCM+R S  I  A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+T K + EI++ L+ G+   PG ++
Sbjct:  127 VGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS 220          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_PANTR (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pan troglodytes GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKYH+ VC TTPCM+R S  I  A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+T K + EI++ L+ G+   PG ++
Sbjct:  127 VGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS 220          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_HUMAN (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKYH+ VC TTPCM+R S  I  A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+T K + EI++ L+ G+   PG ++
Sbjct:  127 VGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS 220          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NDUV2_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLRRGEKLPPGTQN 316
            VGKYH+ VC TTPCM+R S  I  A+ K LG+K  E T D LF++ E+EC+G CVNAPM+ + D          +YYED+T K + EI++ L+ G+   PG ++
Sbjct:  127 VGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS 220          
BLAST of CK934692 vs. ExPASy Swiss-Prot
Match: NUOE_RICBR (NADH-quinone oxidoreductase subunit E OS=Rickettsia bellii (strain RML369-C) GN=nuoE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-17
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 2
Query:    5 VGKYHLLVCGTTPCMVRGSREIEYALLKHLGVKRIEVTKDGLFSVGEMECMGCCVNAPMITVADYSDGSKRYTYDYYEDVTPKPVIEILEMLR 283
            VGK H+ VC TTPC +RGS +I     + LG+K  EVTKD  FS+ E+EC+G CVNAP++ + D          DYYED+TP+ +  I++ LR
Sbjct:   83 VGKNHIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEVTKDQKFSLIEIECLGACVNAPVVQIND----------DYYEDLTPEKMEAIIDKLR 165          
The following BLAST results are available for this feature:
BLAST of CK934692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
NDUV2_ARATH7.407e-5183.04NADH-ubiquinone oxidoreductase 24 kDa subunit, mit... [more]
NDUV2_CAEEL4.235e-2250.00Probable NADH dehydrogenase [ubiquinone] flavoprot... [more]
NDUV2_RAT6.116e-2148.08NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_BOVIN1.363e-2047.12NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_MOUSE5.177e-2046.15NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_PONPY1.153e-1946.15NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_PANTR1.153e-1946.15NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_HUMAN1.153e-1946.15NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NDUV2_GORGO1.153e-1946.15NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NUOE_RICBR2.405e-1747.31NADH-quinone oxidoreductase subunit E OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_A07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934692 ID=CK934692; Name=CK934692; organism=Citrus sinensis; type=EST; length=362bp
GGGGGTAGGCAAATACCACCTACTGGTCTGTGGCACAACACCTTGTATGG
TACGTGGTTCACGAGAAATTGAATATGCCTTACTGAAACACTTGGGCGTG
AAGCGCATTGAAGTAACTAAGGATGGCTTGTTCTCTGTTGGAGAAATGGA
ATGCATGGGATGCTGTGTAAACGCTCCTATGATTACAGTGGCTGATTACT
CCGATGGATCTAAACGATATACTTACGATTATTATGAAGATGTCACTCCG
AAACCAGTTATTGAAATACTTGAAATGTTAAGGAGGGGGGAGAAGCTACC
GCCCGGCACGCAAAATCCAAAGCGCATTAAGTCTGGGCCGGGAAGNNGGG
AATACAACTTTG
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