CK934704

Overview
NameCK934704
Unique NameCK934704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.052e-26
Identity = 57/130 (43.85%), Postives = 84/130 (64.62%), Query Frame = 2
Query:  101 VNMAKRFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            V   K  + KVA+VTAST GIGL +A RL  +GA VV+SSRKQ+NVD+ V  L+  G+ V G +CHV   + R+ L+   V  +G +D+ V NAAVNP   +++   E V DK+  +NVK+++L+ +  +
Sbjct:    6 VERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVV 135          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.986e-26
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  128 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            KVA+VTAST GIGL +A RL  +GA VVISSRKQ+NVD+AV  L+A G+ V G +CHV   + R+ L+   +  +G ID+ V NAAVNP    L+   E V DK+ +INVK+  L+ +  +
Sbjct:   15 KVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLVATALNLHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVV 135          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.986e-26
Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 2
Query:   92 MEKVNMAKR--FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            M    MA+R     KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  LK  G+ V G +CHV   + R+ L+   V+ +G +D+ + NAAV+P    L+   E V DK+ ++NVK++ LL +  +
Sbjct:    1 MASCGMARRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVV 135          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS2_HUMAN (Dehydrogenase/reductase SDR family member 2 OS=Homo sapiens GN=DHRS2 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.978e-25
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 2
Query:  128 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLM 478
            +VAVVT ST GIG  +A RL  +GA VVISSRKQ+NVD+A+ KL+  G+ V GI+CHV   + R+ L+ K +E  G +D  V +A VNP     L T E + DK+  +NVKS  LL+
Sbjct:   15 RVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLL 131          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  128 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  L+  G+ V G +CHV   + R+ L+   V+ +G ID+ V NAAVNP    L+   E V DK  +INVK+  L+ +  +
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVV 135          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.819e-25
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  128 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  L+  G+ V G +CHV   + R+ L+   V+ +G ID+ V NAAVNP    ++   E V DK  +INVK+  L+ +  +
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVV 135          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.282e-24
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 2
Query:  128 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            KVA+VTAST GIG  +A RL  +GA VV+SSRKQ+NVD+AV  L+  G+ V GI+CHV   + R+ LI   ++++  ID+ V NAAVNP   +L+   E V DK+  INV ++ ++++  +
Sbjct:   15 KVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRGIDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVV 135          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.675e-24
Identity = 56/121 (46.28%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  128 KVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            KVA+VTAST GIGL +A RL  +GA VVISSRKQ+NVD+AV  L+  G+ V G++CHV   + R+ L++  ++ +  ID+ V NAAVNP   +L+   E V +K+  INV +S ++++  +
Sbjct:   15 KVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQGIDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVV 135          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.731e-24
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 2
Query:   86 IQMEKVNMAKR--FQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQVTI 490
            +++    M +R     KVA+VTAST GIG  +A RL  + A VV+SSRKQ+NVD+AV  L+  G+ V G +CHV   + R+ L+   V+ +G ID+ V NAAVNP    L+   E V DK  +INVK+  L+ +  +
Sbjct:   15 VRLASSRMTRRDPLTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVV 151          
BLAST of CK934704 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.921e-12
Identity = 42/122 (34.43%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  116 RFQGKVAVVTASTQGIGLGVAERLGLEGASVVISSRKQKNVDKAVEKLKALGIEVIGIICHVSNEQHRKNLIDKTVEKYGRIDVFVLNAAVNPSAADLLKTKESVLDKLWEINVKSSILLMQ 481
            +F+GK+A+VT  T GIGL  A++   EGA V I+ R+Q  +DKAV +   +G  V G+   +S  +    L D   ++ G++D+   NA +  +   L +  E  +D+ ++INVK +I  +Q
Sbjct:    3 KFEGKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELDKAVNQ---IGKNVTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIG-NFLPLGEITEEQVDRTFDINVKGTIFTVQ 120          
The following BLAST results are available for this feature:
BLAST of CK934704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DHRS4_PIG3.052e-2643.85Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
DHRS4_RABIT3.986e-2649.59Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DHRS4_BOVIN3.986e-2644.44Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS2_HUMAN1.978e-2549.57Dehydrogenase/reductase SDR family member 2 OS=Hom... [more]
DHRS4_PONAB5.756e-2547.93Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN9.819e-2547.11Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
DHRS4_MOUSE1.282e-2446.28Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DHRS4_RAT1.675e-2446.28Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
DR4L2_HUMAN3.731e-2443.07Dehydrogenase/reductase SDR family member 4-like 2... [more]
YKVO_BACSU1.921e-1234.43Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004227_G02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934704 ID=CK934704; Name=CK934704; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTACTCACGTTTTCTGTTGCTGATCTAAGGGTTATTCAAAACTGAA
AACCCTCATCACCAAAAACAGTAATTCATTGGCTTATCCAAATGGAGAAG
GTGAACATGGCAAAAAGATTCCAAGGGAAGGTTGCGGTCGTGACGGCTTC
GACTCAAGGCATTGGCTTAGGCGTCGCTGAAAGACTCGGTTTGGAAGGCG
CCTCTGTTGTTATCTCCTCTAGAAAGCAGAAAAATGTGGACAAAGCAGTT
GAGAAACTCAAAGCTCTAGGAATCGAGGTTATTGGAATTATTTGTCATGT
ATCAAACGAACAACATAGGAAGAATCTCATAGACAAAACTGTTGAGAAAT
ATGGAAGAATAGATGTGTTTGTTTTAAATGCTGCTGTCAATCCCTCTGCT
GCTGATCTTCTGAAAACCAAAGAATCTGTACTGGACAAGTTATGGGAAAT
CAATGTCAAATCCAGTATACTTCTTATGCAGGTAACTATATTGTTTTCCT
ACGATTACCCCCCAGGAAATGACAATCTTCAAAATATTCTAAATTATTAT
GAAAAATCTTAAGTTATCCCTCTTTTTTATTAAAAGAAAAAAAAATCATC
AATTTCCCTCCATTTTCCCCCTTGTCCTTTGAACAGAAACAAGGTAAATT
GAAGTTTACAGTAATTGGGGGTATTTTTAAAATCATTATTTCAGAAGAGA
GTAATCCGCCCTTTTCTTAAAGATTCAAGCTGGAATATTGCATTGTGCTG
TAGATAATTAGCACAAAAGTTTTCCATGGCCGTGNNNCCATAGATTTCCC
back to top