CK934717

Overview
NameCK934717
Unique NameCK934717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:539..1166. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 233
            RGIDIQAVNVVINFDFPKN+ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYC+
Sbjct:  430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ 505          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 233
            RGIDIQAVNVVINFDFPK +ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP IDQAIYC+
Sbjct:  433 RGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIYCQ 508          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.159e-35
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 233
            RGIDIQAVNVVINFDFPK++ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP ID+AIYC+
Sbjct:  423 RGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDRAIYCQ 498          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.801e-35
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 233
            RGIDIQAVNVVINFDFPK SETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP ID A+YC+
Sbjct:  446 RGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKTIPPQIDLAVYCQ 521          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 233
            RGIDIQAVNVVINFDFP+ SE+YLHRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP +IDQAIYC+
Sbjct:  423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAIYCQ 498          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.029e-31
Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 227
            RGIDIQ VNVVINFDFPK+SETYLHR+GRSGRFGHLGLA+NLITYEDRF+LY+IEQELGTEIK IPP ID+++Y
Sbjct:  348 RGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELGTEIKPIPPVIDKSLY 421          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.520e-31
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 233
            RGIDIQAVNVVINFDFP+ SE+YLHRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP  ID+AIYC+
Sbjct:  453 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ 528          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.315e-30
Identity = 60/74 (81.08%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 227
            RGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DR+NLY+IEQELGTEI+ IPP ID+ +Y
Sbjct:  346 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLY 419          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.315e-30
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 227
            RGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  346 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
BLAST of CK934717 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.315e-30
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    6 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 227
            RGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  346 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
The following BLAST results are available for this feature:
BLAST of CK934717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
RH8_ARATH1.111e-3797.37DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH8_ORYSJ2.316e-3593.42DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH6_ORYSJ5.159e-3592.11DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
RH12_ORYSJ8.801e-3592.11DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
RH12_ARATH5.339e-3284.21DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DDX6_DICDI2.029e-3185.14Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
RH6_ARATH4.520e-3182.89DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
DHH1_COCIM1.315e-3081.08ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]
DHH1_ASPNC1.315e-3082.43ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_ASPCL1.315e-3082.43ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_F11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934717 ID=CK934717; Name=CK934717; organism=Citrus sinensis; type=EST; length=628bp
GGGCGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACTTTGAT
TTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCTGGAAG
GTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGACCGCT
TCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGCAGATA
CCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCCGGTAT
CTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGTTGATT
CAAGGCACTTGGCTCTGCAGCTGAGGAAGCATTTTATGAACTGGTTATGT
GTGTTGGTGGAAGACTTGCAGCTGGTGCTGTGCGATTAACCCTGGATCCT
TTTTCTCTCTTGGTTTCTGGATTTTCATAGTTCTAAATATTTATCAGGAT
TGTAGAAGAGTTTTAGAACGGTTTATAAATCCCAGATAGAAGCTGGGTCC
AGTTCACAGCTGCGTTTGCTTTCATGGATGGACTGGTTTGGTACTTGTAT
GCCCATGTTCTAGTATGATTTACTGCTGAACTTGGAGGTTGTACTTTGCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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