CK934722

Overview
NameCK934722
Unique NameCK934722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1717 contig Csv1_Contig1717:1..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 5.515e-33
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1
Query:  466 QEDFFDEDHGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPI 750
            +E+F D +    +DHPIW I T GL QS+I+SI +  YK+  GLIE TDC VCL+EF+EDESLRLLPKC+HAFHISCIDTWL SHTNCPLCRA I
Sbjct:  131 EEEFQDREQ---VDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGI 222          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.502e-30
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1
Query:  481 DEDHGPVLD----HPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPIL 753
            DED     D    H +W I T+GL +S I+SI V  +KK  G+I+GT+CSVCL+EF+EDESLRLLPKCSHAFH++CIDTWL SH NCPLCRAP+L
Sbjct:   87 DEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.714e-27
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  535 GLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPILSGAFV 768
            GL +S+I SI V+KY+K  G +E +DCSVCLSEFQE+ESLRLLPKC+HAFH+ CIDTWL+SH+NCPLCRA I++ + V
Sbjct:  133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAV 210          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.828e-26
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query:  526 NTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRA 744
            N  GL +S+I SI V+KYK   G ++G+DCSVCLSEF+E+ESLRLLPKC+HAFH+ CIDTWL+SH+NCPLCRA
Sbjct:  113 NGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  463 TQEDFFDED---HGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGL-IEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPILSG 759
            ++ED+FD      G +    ++ ++  G+ QS+ID++ VF YK  VGL I   DC VCL EF+ ++ LRLLPKCSHAFH+ CIDTWL SH+ CPLCR+ +LSG
Sbjct:   74 SREDYFDNVTALQGQL--QQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSG 174          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  526 NTIGLPQSVIDSIAVFKYKKDVG--LIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPIL 753
            +T GL  ++I  I  FK KK      I GTDCS+CL EF EDESLRLLPKC+H FH+ CID WL+SH+NCPLCRA I+
Sbjct:  150 STAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKII 227          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.758e-22
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  472 DFFDEDHGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPILS 756
            +F D D        +++++  GL Q++ID++ VF YK+  G  E  DC+VCL EF ED+ LRLLP CSHAFHI CIDTWL S++ CPLCR  + S
Sbjct:   97 EFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS 191          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.174e-21
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  466 QEDFFDED---HGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGT-DCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPILS 756
            +ED+FD      G +    +++++  G+ QS ID++ VF YK  +GL     DC+VCL EF+ ++ LRLLPKCSHAFH+ CIDTWL SH+ CPLCR+ +LS
Sbjct:   83 REDYFDNVTALQGQL--QQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLS 181          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.139e-20
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  514 IWYINTIGLPQSVIDSIAVFKYKKDVGLIEGT----------DCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPILSGAF 765
            ++++N  GL Q+ ID++ VF YK+ VG   G           DC+VCL EF E + LRLLP CSHAFH++CIDTWL+S++ CPLCR  + S  F
Sbjct:  100 LFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSPGF 193          
BLAST of CK934722 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.938e-18
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  535 GLPQSVIDSIAVFKYKKDVGLI---EGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAPIL 753
            GL  S+I++   F+Y     L    E  +CSVCL+EF++DE+LRL+PKC H FH  CID WLRSHT CPLCRA ++
Sbjct:  115 GLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLI 190          
The following BLAST results are available for this feature:
BLAST of CK934722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL1O_ARATH5.515e-3368.42RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL5F_ARATH1.502e-3064.21RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL3A_ARATH7.714e-2767.95RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL5G_ARATH3.828e-2669.86Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL2C_ARATH8.826e-2351.46Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL4H_ARATH2.568e-2261.54Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL1D_ARATH9.758e-2250.53RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL4K_ARATH2.174e-2149.50RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL5I_ARATH3.139e-2048.94RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL1N_ARATH2.938e-1853.95RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_E10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934722 ID=CK934722; Name=CK934722; organism=Citrus sinensis; type=EST; length=925bp
GGGCCTCGTGGAGTCTGGGATCTTGCAAAGCAAACCAAATCTTTCTTTTG
GTATGAATTTCTCCCTTCTGCTTGATCATTATCAGATTCTTCCTCCTCTG
CTTTTGTGATGGGGTTTAAATTTGATCATAGAAAACCGCTACTAAAATTC
GATTACAATAATAGCTCAACCCCGCTTAGTCCAGGAAAAAATGATTCTAG
TTCTGGTTTGTCTTCATCATCATGCTTGATTGGTTGCCGAAAGTGTAAGT
GCCAAGGCGATTTCGATTTTCCTCCTCCCTTGCCTCTAGCACCGCCGGCT
GGTGATGGATCACATGCAAAGCAATTAGTTACTACGGGTATGATTGTCAT
GTCTTGCATCATTGCTGGTACGCTTCTTTTTGGCATTTTGTGTGCAGCTG
TAAGAGTTTATCGTTCAAGGAGAAATAATTCAAGAAGAACTAATCCGCCA
ATAATTTTTGCTACGCAAGAGGATTTTTTTGATGAAGATCATGGACCTGT
TTTGGATCATCCCATATGGTACATCAATACTATTGGTCTTCCACAATCTG
TGATTGATTCTATTGCAGTGTTTAAGTACAAAAAAGATGTGGGTTTGATT
GAAGGAACAGATTGCTCTGTTTGCTTGAGTGAGTTTCAGGAAGATGAGAG
CCTTAGGCTATTGCCCAAGTGTAGCCATGCCTTTCACATTTCTTGTATTG
ACACTTGGTTAAGGTCGCATACAAATTGCCCTTTGTGTCGCGCTCCTATA
CTCTCCGGTGCATTTGTTGCTCAAGCCAGTGAATCAGAGCCTAACTCGAA
TGATTCAGATTCAAGAAATGAAATCATGGTGGTGAATTCGGAGAACTCTA
GCGGAGAGGGAAGTGATAACGTGGGAGGTGGGACAGGTGAAGTTAGAAAT
GGAAATGATAATAATAATGGTTCAT
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