CK934772

Overview
NameCK934772
Unique NameCK934772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1727 contig Csv1_Contig1727:1..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.015e-79
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDVE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKK KKLPPVWKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.495e-76
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMHSRGKGISASALPYKR+ PSWLK +SQDV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK KKLPPVWKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 9.481e-76
Identity = 141/151 (93.38%), Postives = 146/151 (96.69%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMHSRGKGISASALPYKR+ PSWLK + QDV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK KKLPPVWKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.112e-75
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGR+HS+GKGIS+SALPY+RT PSWLKISSQDV++ ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYKK KKLPPVWKYESTTASTLVA
Sbjct:    1 MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.015e-69
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+ KKLPP WKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 5.039e-69
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMHSRGKGIS+SA+PYKRTPPSW+K ++ DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+ KKLPP WKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.466e-68
Identity = 130/151 (86.09%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MG MHSRGKGIS+SALPYKRTPP+WLK ++ DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+ KKLPP WKYESTTASTLVA
Sbjct:    1 MGAMHSRGKGISSSALPYKRTPPTWLKTAASDVEEMITKAAKKGQMPSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.374e-64
Identity = 117/151 (77.48%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.374e-64
Identity = 117/151 (77.48%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS13_HUMAN (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.374e-64
Identity = 117/151 (77.48%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVWKYESTTASTLVA 538
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of CK934772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_SOYBN7.015e-7996.6940S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS132_ARATH2.495e-7694.0440S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH9.481e-7693.3840S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_PEA2.112e-7592.7240S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS132_ORYSJ1.015e-6987.4240S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ5.039e-6986.0940S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_MAIZE1.466e-6886.0940S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS13_RAT6.374e-6477.4840S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]
RS13_MOUSE6.374e-6477.4840S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]
RS13_HUMAN6.374e-6477.4840S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_A02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934772 ID=CK934772; Name=CK934772; organism=Citrus sinensis; type=EST; length=807bp
GGGGAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAAC
ACAAAGCTTGCTGCTTCACCTCCGTCGACGTCACCATGGGTCGTATGCAC
AGTCGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACC
ACCAAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTA
AGTTTGCAAAGAAGGGTTTGACTCCATCACAGATTGGTGTTATTCTTCGT
GACTCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTT
GCGTATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGT
ACCACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAAC
AGGAAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGAT
TCACAGGCTTGCTCGCTACTACAAGAAACCCAAGAAGCTTCCTCCTGTCT
GGAAATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAA
GATGCTAGGCGTTGTTTGTGATATCCTTTGTTGGTATCACAACACTCTTT
AAGGAGCCTGATGATTTTATGGTGGATTAGTATAAGTTCAGATGTAAGAC
CTTTATTCATAGTTTTTTTGGAAAGATTAGTCCTTGGAGGAACAGAAATT
TGGAACTTGTTTTTTATTTTGTTGCCTAACGTTTTGTTTCCTTTCGAAAT
TTTGTATTTTTGATGCACTTTATATTCGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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