CK934792

Overview
NameCK934792
Unique NameCK934792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934792_ssr44 microsatellite CK934792_ssr44:44..63. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934792_ssr96 microsatellite CK934792_ssr96:96..107. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12845 contig Csv1_Contig12845:38..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934792 vs. ExPASy Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  326 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPN 793
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
BLAST of CK934792 vs. ExPASy Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  326 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPN 793
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
BLAST of CK934792 vs. ExPASy Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 2
Query:  326 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPS 784
            FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL     ++ ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R N+      N+   +    R   S+EER+EEY RAR RIFS  S
Sbjct:  156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-----DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDS 302          
BLAST of CK934792 vs. ExPASy Swiss-Prot
Match: ARP21_MOUSE (cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 48/158 (30.38%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  326 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPS 784
            FL+  L+N  R R+ +L+ME ++  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++SEES K   L++   +I +  N   ++   +   +RS  +S+EER+EEY R R RIF+  S
Sbjct:  151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQNRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDS 298          
BLAST of CK934792 vs. ExPASy Swiss-Prot
Match: ARP21_HUMAN (cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  326 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR------SVEERKEEYDRARARIFSGPS 784
            FL+  L+N  R R+ +L+ME +I  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++ EES K       I +R N+      N+   +  P R      S+EER+EEY R R RIF+  S
Sbjct:  152 FLINTLKNNSRDRMILLKMEQEIIDFIADNNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKGEESQKR-----FILKRDNSSIDKEDNQQN-RMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 300          
The following BLAST results are available for this feature:
BLAST of CK934792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
R3HD2_MOUSE7.202e-1230.86R3H domain-containing protein 2 OS=Mus musculus GN... [more]
R3HD2_BOVIN7.202e-1230.86R3H domain-containing protein 2 OS=Bos taurus GN=R... [more]
R3HD1_HUMAN1.228e-1133.54R3H domain-containing protein 1 OS=Homo sapiens GN... [more]
ARP21_MOUSE1.604e-1130.38cAMP-regulated phosphoprotein 21 OS=Mus musculus G... [more]
ARP21_HUMAN7.963e-1130.43cAMP-regulated phosphoprotein 21 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004226_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934792 ID=CK934792; Name=CK934792; organism=Citrus sinensis; type=EST; length=794bp
GGGGGGAAAAGGATTAGCCTTTCCCTTTGCCTTTGTCTTCTTGTCTCTCT
CTCTCTCTCTCTCCTTCTCTCCTGATGCCCACAAGAAAGAAACCCTCTTC
TTCTTCTTGATTTCTTCTATTTTTCATTCTGTCTGTGAAGCAAACAGAGA
GGAAAACAAGAAAGAATTAGAAGAAGAGGAGATACAACAGAGAGAAAGAG
AAAGAAGAATTATAGTTAAGACTATTTCAAAGGTCAAAGCCCATCCCCCA
CCCCCAATGGATTCAGCATCGTCAGCAACAGCTGCTGCTGCAATTGTTAA
TGAGAGAGAGTCAATGGTGGATCCATTTTTGGTTGAGGCTCTCCAGAATC
CTCGTCATCGTCTCACCATTCTGCGTATGGAACTTGATATTCAGAGGTTT
TTGCAAAATCCTGATCAGCAGCATTTCGAGTTCCAACATTTTCCTACTTC
TTATCTCCGACTGGCTGCACACCGTGTTTCTCAACACTATGGGCTAGTAA
CTATGGTTCAGGAAAATGGCATAGAAGGGCTGGGTAACAGGATTTTGGTG
AGGAAAACAGCAGAAAGCAAATATCCTGCTGTCCGTTTATCTGAGATTCC
TGCTAAGCAGTCGGAAGAAAGTGATAAGCTTGAAAAGATTAAAATTGCCA
TCAGGCGTAGGCCCAATGCTGGATGTGTTAATGGAGCAAATGAAACTGGG
ACGAAACGAAGTCCTGTTAGAAGTGTGGAAGAGAGGAAGGAGGAGTATGA
TCGAGCACGTGCCCGCATCTTTAGTGGTCCTAGCAGTCCTAACT
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