CK934832

Overview
NameCK934832
Unique NameCK934832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.284e-26
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            E+GKRLAQVVS+PSLTKSGVYWSWNKDSASFENQLS+EASDVEKARKVWE+SEKLVGLA
Sbjct:  340 ESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: PORA_ARATH (Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.846e-25
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            EAGKRLAQVV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct:  347 EAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.410e-25
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            EAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  340 EAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.370e-25
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            EAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWE+SEKLVGLA
Sbjct:  337 EAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.370e-25
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            E+GKRLAQVV++PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  330 ESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: POR_AVESA (Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.013e-25
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            E+GKRLAQVV +PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  255 ESGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 313          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 7.013e-25
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct:  343 ESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.196e-24
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  341 ESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.665e-24
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            EAGKRLAQVVSDPSLTKSGVYWSWN +SASFENQLS+EASD EKA+KVWE+SEKLVGLA
Sbjct:  340 EAGKRLAQVVSDPSLTKSGVYWSWNNNSASFENQLSEEASDPEKAKKVWELSEKLVGLA 398          
BLAST of CK934832 vs. ExPASy Swiss-Prot
Match: PORA_HORVU (Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.665e-24
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    4 EAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 180
            E+GKRLAQVV++P LTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  330 ESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
The following BLAST results are available for this feature:
BLAST of CK934832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
POR_DAUCA8.284e-2693.22Protochlorophyllide reductase, chloroplastic OS=Da... [more]
PORA_ARATH1.846e-2593.22Protochlorophyllide reductase A, chloroplastic OS=... [more]
PORA_CUCSA2.410e-2593.22Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
PORB_HORVU5.370e-2591.53Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_WHEAT5.370e-2591.53Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_AVESA7.013e-2591.53Protochlorophyllide reductase (Fragment) OS=Avena ... [more]
PORB_ARATH7.013e-2593.22Protochlorophyllide reductase B, chloroplastic OS=... [more]
POR_PEA1.196e-2491.53Protochlorophyllide reductase, chloroplastic OS=Pi... [more]
PORB_ORYSJ2.665e-2489.83Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_HORVU2.665e-2489.83Protochlorophyllide reductase A, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934832 ID=CK934832; Name=CK934832; organism=Citrus sinensis; type=EST; length=410bp
GGGGAAGCTGGAAAAAGACTTGCTCAGGTTGTGAGCGATCCAAGCTTGAC
AAAATCAGGTGTTTACTGGAGCTGGAACAAGGACTCAGCTTCATTTGAGA
ATCAGTTGTCTCAGGAAGCTAGTGACGTTGAGAAGGCACGTAAAGTCTGG
GAGATAAGTGAGAAACTTGTTGGTTTGGCCTAATACAAAACCTGGAGATT
CAGATCTACCAGTTTATGTTATGGGAGGGTTTTATGAGCTTGAAGGTTTG
TTAGGTAGCGGAGGGTTTTATGAGCTTGAAGGTTTGTTAGGTAGCGGAGT
TTGGAATTGTGGTCAGCTTTTCAATTGTAGATGTAGATGGCTTGTGGAAA
AAAAATGTCAATAAATCACTCACTCCTGTTGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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