CK934843

Overview
NameCK934843
Unique NameCK934843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13185 contig Csv1_Contig13185:1..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.024e-100
Identity = 177/191 (92.67%), Postives = 184/191 (96.34%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCRLGVI 660
            MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGT +GIKC+DGIV+GVEKLI SKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIV RAKSEATNYESVYGE +PVKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM+EPSGISYRYFGAAIGKG+QAAK EIEKLKLSEMTCR G+I
Sbjct:    1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGII 191          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 361.303 bits (926), Expect = 2.523e-99
Identity = 175/191 (91.62%), Postives = 185/191 (96.86%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCRLGVI 660
            MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTV+GIKC+DGIVMGVEKLIASKMMLPGSNRRIHSVHRH+GMAVAGLAADGRQIV RAKSEA +YESVYG+ +PVKEL++RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKG+QAAK EIEKL LSEMTC+ GVI
Sbjct:    1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEGVI 191          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.611e-96
Identity = 167/191 (87.43%), Postives = 181/191 (94.76%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCRLGVI 660
            MSSIGTGYDLSVTTFSPDGRVFQ+EYA KAVDNSGTV+GIKC+DGIV+GVEKL+ SKMML GSNRRIHSVH HSG+AVAGLAADGRQIV+RAKSEA +YE VYGEPI VKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSG+SY+YFGAA+GKGRQAAK EIEKLKLSE+TCR G++
Sbjct:    1 MSSIGTGYDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGIV 191          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.493e-67
Identity = 114/187 (60.96%), Postives = 155/187 (82.89%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCR 648
            MSS+G+GYDL V+T+SPDG++FQ++YA KAV+NSGT++ IK +DG+V+GVEKL+ SKM+  GSNRR+H +  H G+A+AG  AD RQ++TRA+SEA NY+S YG+PIP+K L+QR+ASY H+ TLY  +RPFGC + + G D+ GPQL+++EPSG    YFGA++GKG+QAAK E+EK+K SEMTCR
Sbjct:    1 MSSVGSGYDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCR 187          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.264e-66
Identity = 122/185 (65.95%), Postives = 153/185 (82.70%), Query Frame = 1
Query:   94 SIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCR 648
            SIGTGYDLS TTFSPDGRVFQ+EYAAKAVDNSGT +G++ +DG+V+ VEKL+ SKM++P +NRRIH+V RH G+A++GL ADGRQ+V+R ++EAT+Y   YG  I  K L +R++++V L +LY  +RPFG  VILG  D++GPQLYMIEPSGIS+ YFG AIGKG +AAK EIEKLKLSEMT R
Sbjct:    1 SIGTGYDLSSTTFSPDGRVFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAR 185          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCR 648
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+C+DG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAK EIEKL++ EMTCR
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCR 188          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCR 648
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+C+DG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAK EIEKL++ EMTCR
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCR 188          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCR 648
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+C+DG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAK EIEKL++ EMTCR
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCR 188          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCR 648
            MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+C+DG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAK EIEKL++ EMTCR
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCR 188          
BLAST of CK934843 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.314e-52
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 1
Query:   88 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCEDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKAEIEKLKLSEMTCRL 651
            MS+IGTGYDLS + FSPDGRVFQI+YA+KAV+ SGTVIGI+ +D +V+ VEK+I SK+  P +  RI ++ ++ GMAVAGL ADG  +   A+ EA NY   + + IP+K L  RVA YVH  TLY  +RPFG  +IL  +D  +GPQLY IEPSG S+ YF  A GK +Q AK E+EKLK+   T  L
Sbjct:    1 MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDEL 189          
The following BLAST results are available for this feature:
BLAST of CK934843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA3_SPIOL1.024e-10092.67Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_ARATH2.523e-9991.62Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA3_ORYSJ2.611e-9687.43Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_DICDI1.493e-6760.96Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA3_ACACA1.264e-6665.95Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA3_RAT5.310e-6564.89Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE5.310e-6564.89Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_HUMAN5.310e-6564.89Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN5.310e-6564.89Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA3_DROME2.314e-5255.03Proteasome subunit alpha type-3 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_A10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934843 ID=CK934843; Name=CK934843; organism=Citrus sinensis; type=EST; length=662bp
GGGGATTTCACAGAACTTTGCTTTCTCAGTAGAAGGGAAGGAGGATCGAA
TTGACTCACAAATCGAAAAAGAAAGAAGAGAGCAAGAATGAGCAGCATAG
GCACAGGCTACGATCTGTCGGTGACCACATTCTCTCCCGACGGTCGCGTT
TTCCAGATCGAATACGCCGCCAAAGCCGTCGACAACAGCGGGACTGTGAT
TGGAATTAAATGCGAAGATGGCATCGTTATGGGAGTGGAGAAGCTAATAG
CGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAATCCATTCCGTTCAT
CGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCGGATGGGAGACAAAT
TGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGAAAGTGTATATGGCG
AACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTGCTAGCTATGTGCAT
CTATGTACTCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTAATTCT
TGGAGGTTATGACAGAGATGGACCGCAATTGTATATGATTGAACCTTCTG
GTATCTCCTATAGGTATTTTGGAGCTGCAATTGGAAAGGGCAGGCAGGCT
GCTAAAGCAGAGATTGAAAAGTTGAAGCTTTCTGAAATGACCTGCCGACT
AGGGGTCATTGA
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