CK934850

Overview
NameCK934850
Unique NameCK934850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_CITSI (Putative membrane protein ycf1 OS=Citrus sinensis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.999e-56
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 315
            VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR
Sbjct: 1726 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 1829          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_GOSHI (Putative membrane protein ycf1 OS=Gossypium hirsutum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.503e-36
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 315
            VPE IL P  RRELR  I FNS+++NGM +N VF NN K  G+VL KNK+L  +K +LI+LKFF+W N RLEDL CMNRYWFNTNNGSRFSM+R+ MYPRLKIR
Sbjct: 1789 VPENILSPNHRRELRIRISFNSRDKNGMHRNAVFLNNVKNCGQVLTKNKHLDSDKKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMIRIRMYPRLKIR 1892          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_GOSBA (Putative membrane protein ycf1 OS=Gossypium barbadense GN=ycf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.503e-36
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 315
            VPE IL P  RRELR  I FNS+++NGM +N VF NN K  G+VL KNK+L  +K +LI+LKFF+W N RLEDL CMNRYWFNTNNGSRFSM+R+ MYPRLKIR
Sbjct: 1786 VPENILSPNHRRELRIRISFNSRDKNGMHRNAVFLNNVKNCGQVLTKNKHLDSDKKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMIRIRMYPRLKIR 1889          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_BUXMI (Putative membrane protein ycf1 OS=Buxus microphylla GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.109e-34
Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGG--GRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 315
            VPE I  P+RRRELR  ICFNS N+N + +NPVFFN  K    GR LD+NK+L  +K +LI+LK F+W N +LEDL CMNRYWFNTNNGSRFSM R+HMYPRLKIR
Sbjct: 1754 VPENISSPRRRRELRIRICFNSGNKNFVDRNPVFFNENKVKHCGRFLDENKHLDTDKKKLIKLKCFLWPNYQLEDLACMNRYWFNTNNGSRFSMSRIHMYPRLKIR 1859          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_EUCGG (Putative membrane protein ycf1 OS=Eucalyptus globulus subsp. globulus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.471e-34
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 312
            VPE +L  KRRRELR  ICFNS+ +NG+ KNPVF NN K  G  LDK K+   EK +LI+LKFF+W N RLEDL CMNRYWF+TNNG RF+M+R+HMYPRL+I
Sbjct: 1776 VPEKVLSTKRRRELRIRICFNSRKRNGIHKNPVFCNNVKNWGEFLDKRKHF--EKKKLIKLKFFLWPNYRLEDLSCMNRYWFDTNNGGRFTMIRIHMYPRLQI 1876          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_VITVI (Putative membrane protein ycf1 OS=Vitis vinifera GN=ycf1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.388e-34
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLK---FFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 315
            VPE IL P+RRR+ R LICFN +N++G+ +NPVF N G    + LD+NK+L R+KNQLI+LK    F+W N RLEDL CMNRYWF+TNNGS FSM+R+HMYPRLKIR
Sbjct: 1788 VPENILSPRRRRKFRILICFNLRNRSGVARNPVFCN-GNSCNKFLDENKHLDRDKNQLIKLKKLKLFLWPNYRLEDLACMNRYWFDTNNGSCFSMIRIHMYPRLKIR 1893          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_NICTO (Putative membrane protein ycf1 OS=Nicotiana tomentosiformis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.958e-31
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 312
            VPE IL  +RRRELR    FNS N NG+ +N VF N  N K   + LD+ K L +EKN+LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1787 VPENILWSRRRRELRIRSFFNSLNWNGVDRNSVFCNENNVKNWSQFLDERKPLYKEKNELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1891          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_COFAR (Putative membrane protein ycf1 OS=Coffea arabica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.557e-31
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLK 309
            VPE IL  + RRELR LICF SKN+N + KN VF        ++LDK K+L ++K +LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFSM+R++MYPRLK
Sbjct: 1772 VPENILSTRCRRELRILICFTSKNRNSVDKNSVFCTKNNSS-QLLDKRKDLDKDKKELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIYMYPRLK 1872          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_MORIN (Putative membrane protein ycf1 OS=Morus indica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.339e-31
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLK 309
            VPETIL P+ RRELR LICFNS+N+NG+  N  F N  K    VL+K+K     +N +I+LKFF+W N RLED  CMNRYWF+TNNGSRFSMVR+HMYP+ K
Sbjct: 1757 VPETILSPRHRRELRILICFNSRNRNGIPSNAFFCNENKVKSPVLNKSKI---NQNNIIRLKFFLWPNYRLEDFACMNRYWFDTNNGSRFSMVRIHMYPQFK 1855          
BLAST of CK934850 vs. ExPASy Swiss-Prot
Match: YCF1_TOBAC (Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.361e-31
Identity = 66/105 (62.86%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    4 VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNLAREKNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 312
            VPE IL  +RRRELR    FNS N NG+ +N VF N  N K   + LD+ K L +EKN+LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYP+LKI
Sbjct: 1796 VPENILWSRRRRELRIRSLFNSLNWNGIDRNSVFCNENNVKNWSQFLDERKPLYKEKNELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPQLKI 1900          
The following BLAST results are available for this feature:
BLAST of CK934850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
YCF1_CITSI2.999e-56100.00Putative membrane protein ycf1 OS=Citrus sinensis ... [more]
YCF1_GOSHI4.503e-3668.27Putative membrane protein ycf1 OS=Gossypium hirsut... [more]
YCF1_GOSBA4.503e-3668.27Putative membrane protein ycf1 OS=Gossypium barbad... [more]
YCF1_BUXMI1.109e-3466.98Putative membrane protein ycf1 OS=Buxus microphyll... [more]
YCF1_EUCGG2.471e-3466.02Putative membrane protein ycf1 OS=Eucalyptus globu... [more]
YCF1_VITVI9.388e-3464.49Putative membrane protein ycf1 OS=Vitis vinifera G... [more]
YCF1_NICTO1.958e-3163.81Putative membrane protein ycf1 OS=Nicotiana toment... [more]
YCF1_COFAR2.557e-3162.75Putative membrane protein ycf1 OS=Coffea arabica G... [more]
YCF1_MORIN3.339e-3162.75Putative membrane protein ycf1 OS=Morus indica GN=... [more]
YCF1_TOBAC4.361e-3162.86Putative membrane protein ycf1 OS=Nicotiana tabacu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004225_H12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934850 ID=CK934850; Name=CK934850; organism=Citrus sinensis; type=EST; length=825bp
GGGGTTCCTGAAACTATTTTACTCCCTAAACGTCGTAGAGAATTAAGAAC
CCTAATTTGTTTCAATTCGAAGAATCAAAATGGTATGCAGAAAAATCCAG
TATTTTTTAATAACGGAAAGGGCGGCGGCCGCGTTTTGGATAAAAACAAA
AATCTTGCTCGAGAGAAAAATCAACTAATTCAATTAAAGTTCTTTATTTG
GGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTATTGGTTTA
ATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATATGTATCCA
CGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATGTCCCATT
TTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCCATTCCAG
TCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGATCCATAA
ATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTTTTGCCGA
AATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGATTGATTAT
TGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTATTGTGTAT
ATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAATTCATCT
TAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATGCATTCAT
CTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCGGTTGAAT
TTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTCACATTTA
GAATTGCACAGAAGAGACTATTCAT
back to top