CK934856

Overview
NameCK934856
Unique NameCK934856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934856 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 3
Query:  141 TATDHIVGANKGWNPSINYTLWANNQTFYVNDLISFRYQKTQYNVFMVNQSGYDNCTTEGALGNWS--SGKDFILLDKAKRYYFICGNGQCFNGMKVSVLVHPLHSPPSAAIVAN 479
            TA  + VG NK WNP+INYT+WA  + FY+ D + F + + Q+N+  VN++ Y+ C  +  + NW+  +G+D + L++ K YY + G G C+ GMK+SV V  L  PP +A V N
Sbjct:   25 TAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAPVKN 139          
BLAST of CK934856 vs. ExPASy Swiss-Prot
Match: ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.178e-13
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  144 ATDHIVGANKG-W----NPSINYTLWANNQTFYVNDLISFRYQKTQYNVFMVNQSGYDNCTTEGALGNWSSGKDFILLDKAKRYYFICG-NGQCFNGMKVS-VLVHPLHS--PPSAAIVANDTSPKSSAPPPVLHTGLVSLRALFVAVLPIWLGM 581
            A +  VG   G W    + S ++T WA    F V D I FRY+  + +V  V +  Y++C T   L N++ G+  + LD++  +YFI G NG C  G K+S V++ P HS   P+ + V  +  P + AP P+  +G V L   +V VL + LG+
Sbjct:   28 ANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVVISPRHSVISPAPSPVEFEDGP-ALAPAPI--SGSVRLGGCYV-VLGLVLGL 178          
BLAST of CK934856 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  144 ATDHIVGANKGWNPSINYTLWANNQTFYVNDLISFRYQKTQYNVFMVNQSGYDNCTTEGALGNWSSGKDFILLDKAKRYYFICG-NGQCFNGMKVSVLVHPLHSPPSAAIVANDTSPKSSAP 506
            AT + VG   GW    +Y+ WA+++TF V D + F Y    + V  V +S Y +CT+  ++   S+G   I L KA ++YFICG  G    GMK+S+ V    S  SAA  A  +S    +P
Sbjct:   24 ATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKV-KASSGSSAAPSATPSSSGKGSP 144          
BLAST of CK934856 vs. ExPASy Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12
Identity = 45/138 (32.61%), Postives = 64/138 (46.38%), Query Frame = 3
Query:  132 TTTTATDHIVGANKGW--NPSINYTLWANNQTFYVNDLISFRYQKTQYNVFMVNQSGYDNCTTEGALGNWSSGKDFILLDKAKRYYFICGN-GQCFNGMKVSVLVHPLHSPPSA----AIVANDTSPKSSAPPPVLHT 524
            T + A    VG +  W  NP  NY  W+    F V+D + F Y K   +V  VN++ YD C T+  +     G   I LD+   +YFI GN   C  G K++V+V     P +A    A     ++P S  PP   H+
Sbjct:   24 TISNARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVISARIPSTAQSPHAAAPGSSTPGSMTPPGGAHS 161          
BLAST of CK934856 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 3
Query:  144 ATDHIVGANKGWNPSI--NYTLWANNQTFYVNDLISFRYQKTQYNVFMVNQSGYDNCTTEGALGNWSSGKDFILLDKAKRYYFICG-NGQCFNGMKVSVLVHP 443
            AT H VG + GW   +  +Y  WA++  F+V D + F Y    +NV  V+Q  + +C +     +++SG D I L +   +YF+CG  G C  G KV + V P
Sbjct:    1 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDP 103          
The following BLAST results are available for this feature:
BLAST of CK934856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LAML_ARATH1.172e-2341.74Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
ENL1_ARATH4.178e-1334.84Early nodulin-like protein 1 OS=Arabidopsis thalia... [more]
BCP_PEA3.537e-1236.89Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
ENL2_ARATH4.619e-1232.61Early nodulin-like protein 2 OS=Arabidopsis thalia... [more]
MAVI_CUCPE6.033e-1234.95Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004226_A06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934856 ID=CK934856; Name=CK934856; organism=Citrus sinensis; type=EST; length=836bp
GGGGGACCAACAACAGAGCAACCAGTGAACTAACCACCATGTCTACTAGA
TCCAGCTCAGCCACAGCTCACCACCTCATCCTCTACTGCAGTAGCAGCAT
TTTTGCCCTCATCTTTTTCAGTATTGCTCCAACAACCACCACCGCAACTG
ACCACATTGTTGGTGCCAACAAAGGCTGGAACCCTAGCATCAACTACACT
CTCTGGGCCAATAACCAAACCTTCTATGTCAATGACCTCATCTCATTTAG
GTACCAAAAGACACAATACAATGTGTTTATGGTGAACCAAAGTGGTTATG
ACAACTGCACCACAGAAGGGGCATTGGGCAATTGGAGCAGTGGCAAAGAT
TTCATACTTCTGGACAAGGCCAAGAGATACTACTTCATTTGTGGCAACGG
TCAGTGCTTCAATGGCATGAAAGTATCTGTTCTTGTCCATCCTCTGCATT
CACCACCCTCAGCTGCCATTGTGGCCAATGATACGTCACCAAAATCTTCA
GCTCCTCCACCGGTGTTGCATACGGGTTTGGTGAGTTTACGAGCTTTATT
TGTGGCTGTACTTCCAATTTGGCTAGGAATGGGATGGATCTAGAATGTTA
TAGTTTCAGTTTTTAAGCCCTGTGAACAGCTGTGAGTGTATTATTATCAT
TGTTTGTTAATGATTTTATGTGGCTTAATGCGGCTTTATTCAACCTTATC
AGCAACTTTCCCTTGGGCATTGTCAAGTGTAAGAATGTATCCAATCCCAG
CTAGTTCATAAGTCTGTGTGTGCTTTTCTTGGGTTAATGGATTTCTTTGT
CATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top