CK934887

Overview
NameCK934887
Unique NameCK934887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:121..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.864e-55
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 3
Query:   78 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 425
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLAEL KKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVG+KK+ELQQTIAKH+ATAS
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.951e-52
Identity = 96/113 (84.96%), Postives = 106/113 (93.81%), Query Frame = 3
Query:   78 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 416
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+L KKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVG+KK+ELQ TIAKHLA
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.338e-49
Identity = 93/115 (80.87%), Postives = 104/115 (90.43%), Query Frame = 3
Query:   81 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 425
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AEL KK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG+KK+ELQQTIAKH+++ S
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.201e-45
Identity = 83/119 (69.75%), Postives = 103/119 (86.55%), Query Frame = 3
Query:   69 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 425
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++ KK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVG+KKEELQQTI KH A A+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.681e-37
Identity = 66/110 (60.00%), Postives = 92/110 (83.64%), Query Frame = 3
Query:   81 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 410
            A EG+VI CHT+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  AE+ KK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVG+ K+E+ + + KH
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.921e-35
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 3
Query:   78 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 428
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE  KK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVG++K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.921e-35
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 3
Query:   78 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 428
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE  KK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVG++K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.921e-35
Identity = 68/118 (57.63%), Postives = 92/118 (77.97%), Query Frame = 3
Query:   78 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 428
            AAEEGQVIGCH ++ W  QL  + ++ +L+V+DFTASWC PCR IAP  A+L KK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVG++KE+L  TIAKH   A+A
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 3
Query:   87 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 425
            EG V  CH+ E W  +LQ++ +TK+LV VDFTA+WCGPCR I P   EL KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVG+KK++L++ +A   A A+
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of CK934887 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35
Identity = 65/110 (59.09%), Postives = 89/110 (80.91%), Query Frame = 3
Query:   81 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELVKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 410
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++EL KK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VG++K+EL   IA H
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
The following BLAST results are available for this feature:
BLAST of CK934887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
TRXH_RICCO4.864e-5587.93Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH2.951e-5284.96Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC2.338e-4980.87Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.201e-4569.75Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH2.681e-3760.00Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ1.921e-3558.12Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.921e-3558.12Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH2_BRANA1.921e-3557.63Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_PICMA2.509e-3558.41Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES2.509e-3559.09Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934887 ID=CK934887; Name=CK934887; organism=Citrus sinensis; type=EST; length=755bp
GGGGAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGG
TAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCAT
CGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATG
AAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGTGGTGCGGACCA
TGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGTCAAGAAACTGCCTAA
TGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTG
ACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAG
ATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGACTAT
TGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTATAACTATCCTCC
TGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGT
AATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAA
TATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATA
ATTTAATTTCATATTTGGGGTAGATCGTTCTTTGTTGTTGAACCTAATTT
TGATATTGAGAGTGACTCATATTTTGTTGAGTGTGTTCCTGGGATATGAT
AAGACATGCATGACAGCTTCTTGTCCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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