CK934888

Overview
NameCK934888
Unique NameCK934888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1857 contig Csv1_Contig1857:33..452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934888 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  298 IINNRETGRSRGFGFITFRDEKSMRHAI*GMNGQNLDGPNI 420
            IIN+RETGRSRGFGF+TF+DEKSMR AI GMNGQ LDG NI
Sbjct:   37 IINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNI 77          
BLAST of CK934888 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1
Query:  286 MPKSIINNRETGRSRGFGFITFRDEKSMRHAI*GMNGQNLDGPNI 420
            +   IIN+RETGRSRGFGF+TF+DEKSM+ AI GMNGQ+LDG +I
Sbjct:   35 LDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79          
BLAST of CK934888 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.700e-12
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  298 IINNRETGRSRGFGFITFRDEKSMRHAI*GMNGQNLDGPNI 420
            IIN+RETGRSRGFGF+TF+DEKSM+ AI GMNGQ+LDG +I
Sbjct:   39 IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79          
BLAST of CK934888 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.922e-12
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1
Query:  286 MPKSIINNRETGRSRGFGFITFRDEKSMRHAI*GMNGQNLDGPNI 420
            +   II +RET RSRGFGF+TF  E++MR AI GMNG+ LDG NI
Sbjct:   14 LESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNI 58          

HSP 2 Score: 31.5722 bits (70), Expect = 9.922e-12
Identity = 12/22 (54.55%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  108 SSLHEAFSAYGDILDSKVRLNQ 173
            +SLH AFS YG++L+SK+ L++
Sbjct:    1 NSLHSAFSTYGEVLESKIILDR 22          
BLAST of CK934888 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  298 IINNRETGRSRGFGFITFRDEKSMRHAI*GMNGQNLDGPNI 420
            IIN+RETGRSRGFGF+TF+DEK+M+ AI GMNGQ+LDG +I
Sbjct:   39 IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79          
BLAST of CK934888 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 3
Query:   45 MASADVEFRCFVGGLAWATPDSSLHEAFSAYGDILDSKV 161
            MA+ADVE+RCFVGGLAWAT + SL  AF++YG+ILDSKV
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKV 39          
The following BLAST results are available for this feature:
BLAST of CK934888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GRP1_DAUCA1.034e-1282.93Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP1_SINAL5.130e-1271.11Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP2_SINAL6.700e-1278.05Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SORBI9.922e-1262.22Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
GRP7_ARATH1.493e-1175.61Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRPA_MAIZE9.714e-1174.36Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004225_E10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934888 ID=CK934888; Name=CK934888; organism=Citrus sinensis; type=EST; length=420bp
TTTCTTGTTATTCCTTCTTAGTCCCCCTTTCAAGTTTTCTCCTAATGGCT
TCAGCCGATGTCGAGTTTCGGTGCTTCGTAGGCGGCCTGGCCTGGGCCAC
CCCTGACAGCTCTCTCCATGAGGCCTTCAGTGCTTACGGCGATATCCTTG
ATTCGAAGGTCCGTTTGAACCAAATCCGACCCCATCCACGATTCGGCTTG
TTCTGATCTGTGATTCGTGTGCTCTGTGATCTGTTTCTGTTACTCTGCTA
CTGTTCTCTGTTACTACTGTTACTCTATTATTACTATGCCTAAATCGATT
ATTAACAATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCATTACCTT
CCGCGATGAGAAGTCGATGAGGCACGCAATCTAAGGCATGAACGGCCAGA
ATCTGGACGGCCCTAACATA
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