CK934898

Overview
NameCK934898
Unique NameCK934898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934898_ssr451 microsatellite CK934898_ssr451:451..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.327e-48
Identity = 91/111 (81.98%), Postives = 95/111 (85.59%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+FDD TRE+P GHCLVAGIKK P KVI KDSAKKTAK SRVKAFVKLV+YQHLMPTRYT DVDLK  V  D LQSKDKK+ A KETKK LEERFKT KNRWFFTKLRF
Sbjct:   25 IVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 33.8834 bits (76), Expect = 2.327e-48
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            MV F KPNK VILL GRYAG+
Sbjct:    1 MVKFLKPNKAVILLQGRYAGK 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.614e-46
Identity = 86/111 (77.48%), Postives = 94/111 (84.68%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            I+KSFDD  R+RP GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYT DVDLK V T D+LQSKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct:   25 IIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 30.8018 bits (68), Expect = 1.614e-46
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            MV F K NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 6.583e-45
Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            I+KSFDD T +R  GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYT DVDLK V T D+L+SKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct:   25 IIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 30.8018 bits (68), Expect = 6.583e-45
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            MV F K NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.433e-42
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVKSFDD T E+  GHCLVAG+KK P KVI KDSAKKTAK SRVK F K+++YQH+MPTRYT D+DLK VV+AD++ SKDKK+ A KE K + EERFKT KNRWFFTKLRF
Sbjct:   25 IVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 27.335 bits (59), Expect = 6.433e-42
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            MV   KP K VILL GRY G+
Sbjct:    1 MVKCMKPGKAVILLQGRYTGK 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.259e-39
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL----KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IV++FD+ TR+RP GHCLVAGI + P KVI KDSAKK  K SRVKAF+KLV+Y H+MPTRYT D DL    K VV AD LQ++DKK+ A + TK RL ERFKT KNRWFFTKLRF
Sbjct:   25 IVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138

HSP 2 Score: 31.5722 bits (70), Expect = 6.259e-39
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KPNK VILL G+YAGR
Sbjct:    1 MEKFLKPNKAVILLQGKYAGR 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.157e-30
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IV++FDD T  RP GH LV G++K P KV  + S KK AK S +K F+K V+Y HLMPTRYT DVD K  V A++ ++  KK+ A KE KK LEE+FKT KNRWFFTKLRF
Sbjct:   25 IVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFK-GVAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134

HSP 2 Score: 25.409 bits (54), Expect = 1.157e-30
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            MV F K  K V++L GR+AG+
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGK 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.546e-26
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.1054 bits (61), Expect = 1.546e-26
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 1.546e-26
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.1054 bits (61), Expect = 1.546e-26
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 3.410e-26
Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LV+GI + P KV      KK AK S++KAFVK+ +Y HLMPTRY+ D+ L K +V  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.1054 bits (61), Expect = 3.410e-26
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3 
Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21
The following BLAST results are available for this feature:
BLAST of CK934898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA2.327e-4881.9860S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH1.614e-4677.4860S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH6.583e-4575.6860S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH6.433e-4272.0760S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU6.259e-3967.8360S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST1.157e-3059.4660S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM1.546e-2652.6860S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE1.546e-2652.6860S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU3.410e-2650.8960S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT5.779e-2651.7960S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004225_E02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934898 ID=CK934898; Name=CK934898; organism=Citrus sinensis; type=EST; length=787bp
GGGGGAGGAGTGAGAGTTGAAATGGTGACGTTTCCGAAACCAAATAAGAC
CGTGATCCTTCTTTAGGGCCGTTACGCCGGCCGATTGTGAAGTCGTTCGA
CGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGGTAGCGGGGATAA
AGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCGAAGAAGACAGCG
AAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAGCTACCAGCACCT
GATGCCCACGCGCTACACTCACGACGTCGATTTGAAGGTAGTCGTGACGG
CTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCTTGCAAGGAGACC
AAGAAACGCCTCGAGGAGAGGTTTAAGACTAGCAAGAATCGTTGGTTCTT
TACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTC
GTTTTGTTTTGTTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAGTGCGA
ATTTTGAGATTTATGTAGTGTTTTGTGAACTTATTTTTTTTCTGGATCTG
GTACTATTTTTATGTGAAAAAAAAATCACGCTGCCGACAAAAAAATTGGT
TCTCTGTTGCACTGCTTGTGGTCAACAGATTGCTACTCTTCGTCTTCATC
TTCGTCTTTACTCTTCGATCTGCTACTGCTACTACTTGAACAATATGCTC
AAGTTCAGCCAGCCTTTACTTCATCGTTTTCTTATATTATATTCTTTTGA
TTTGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top