CK934902

Overview
NameCK934902
Unique NameCK934902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934902_ssr60 microsatellite CK934902_ssr60:60..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1739 contig Csv1_Contig1739:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.848e-100
Identity = 179/235 (76.17%), Postives = 203/235 (86.38%), Query Frame = 2
Query:   80 MSSQIVXXXXXXXXXXXXXXKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRA-GSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 781
            MSSQI               KN+RF+SEGRA+ AAAAV+ SGK+P   S+F R+ GS  AS+SW++G +A+PAAAY +Q+QEV AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK++VPSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GVI YGRKLIGATDPQKS PGTIRGDLAV VGRNIIHGSDGPETAKDEI LWFKP++LV+YTSN+EKW+Y
Sbjct:    1 MSSQICRSASKAAKSLLSSAKNARFFSEGRAIGAAAAVSASGKIPLYASNFARSSGSGVASKSWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 360.533 bits (924), Expect = 5.943e-99
Identity = 175/234 (74.79%), Postives = 198/234 (84.62%), Query Frame = 2
Query:   80 MSSQIVXXXXXXXXXXXXXXKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 781
            MSSQI               KN+RF+SEGRA+ AA+ V  +GK+P   S+FG++GS   S SW++G +A+PAAA+ LQ+QE  AAEMERTFIAIKPDGVQRGLISEII+RFERKG+KLV IK++VPSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKS PGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPE+LV+YTSNAEKW+Y
Sbjct:    1 MSSQICRSASRAARSLLSSAKNARFFSEGRAIGAASVVHATGKVPQYASNFGKSGSGFVSNSWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.160e-94
Identity = 170/213 (79.81%), Postives = 187/213 (87.79%), Query Frame = 2
Query:  143 NSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 781
            +SRF  EGR V+A AAV+   K PYL S     G + AS +W+S A+AIPAAAY LQ+QE  AAE ERTFIAIKPDGVQRGLISEI++RFERKGFKLVAIK+V+PSK+FAQKHYHDL ERPFFNGLC+FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKS PGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPE+LVNYT NAEKW+Y
Sbjct:   24 SSRFLPEGRTVAATAAVSLRVKAPYLASF----GGANASGTWMSTALAIPAAAYLLQDQEACAAEFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 232          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.602e-70
Identity = 126/150 (84.00%), Postives = 138/150 (92.00%), Query Frame = 2
Query:  332 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 781
            AE ERTFIAIKPDGVQRGLISEI++RFERKGF LVAIK+V+PS+ FAQKHY DLK++PF+ GL  + SSGPV+AMVWEGEGVI YGRKLIGATDPQKS PGTIRGDLAVV GRNIIHGSDGPETAKDEIKLWFKPE+LVNYT NAEKW+Y
Sbjct:    1 AEFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 150          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.098e-52
Identity = 97/149 (65.10%), Postives = 118/149 (79.19%), Query Frame = 2
Query:  338 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 784
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K ++PSKE A+KHY   KERPFF GL  F++SGPV+AMVWEG+GVI   RKLIGAT P ++ PGTIRGDL + +GRN+IHGSDGPETA  EI LWF   +L N+  + +KW  E
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.098e-52
Identity = 97/150 (64.67%), Postives = 121/150 (80.67%), Query Frame = 2
Query:  338 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 787
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A +HY   +ERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++ PGTIRGDLAV +GRN+IHGSDGP+TA+ EI LWF PE+L  +T + + W  ES
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVES 152          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.196e-52
Identity = 95/148 (64.19%), Postives = 120/148 (81.08%), Query Frame = 2
Query:  341 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 784
            ER+FIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVIT  RK+IGAT P ++ PGTIRGDLA+ +GRN+IHGSD PETA+ EI LWF P +L ++T + + W  E
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIGLWFNPSELSDWTPSDQTWRVE 151          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.174e-52
Identity = 98/149 (65.77%), Postives = 118/149 (79.19%), Query Frame = 2
Query:  341 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 787
            ERTFIAIKPDGVQRG +SEI+ RFE+KGFKLV +K ++PSKE AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGVI   RKLIGAT P ++ PGTIRGDLA+ +GRNIIHGSDG +TAK EI LWF  E+L  + ++  KW  E+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEINLWFNEEELCEWETSDSKWRSEN 152          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.174e-52
Identity = 98/150 (65.33%), Postives = 119/150 (79.33%), Query Frame = 2
Query:  338 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 787
            MERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K V PS++ A +HY   +ERPFF GL +F++SGPVIAMVWEG+GVI   RKLIGAT P  + PGTIRGDLAV +GRN+IHGSDGP+TA+ EI LWF  E+L  +T + + W  ES
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIES 152          
BLAST of CK934902 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.298e-52
Identity = 97/149 (65.10%), Postives = 120/149 (80.54%), Query Frame = 2
Query:  338 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSGPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 784
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPVIAMVWEGEGVI   RKLIGAT P ++ PGTIRGDLAV +GRN+IHGSDG +TA  EI LWF+  +LV++  + + W  E
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
The following BLAST results are available for this feature:
BLAST of CK934902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_ARATH1.848e-10076.17Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK4_ARATH5.943e-9974.79Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK4_SPIOL1.160e-9479.81Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK3_SPIOL2.602e-7084.00Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_PROMA1.098e-5265.10Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM31.098e-5264.67Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS33.196e-5264.19Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROMS4.174e-5265.77Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM4.174e-5265.33Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMT9.298e-5265.10Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934902 ID=CK934902; Name=CK934902; organism=Citrus sinensis; type=EST; length=795bp
GGGGATCACTCTGTTGGGTTTACTTACTCTCTTGTTTCAGCTTAAATTTG
AGTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGA
TCTGCTTCTAGAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTCGCG
CTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACATTCA
GTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCCTCA
ACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGCAGC
TTACACGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCACTT
TCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAAATC
ATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGATAGT
AGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGGAAA
GACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTCATT
GCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACTCAT
TGGAGCCACAGATCCTCAGAAATCAGGACCTGGAACAATCAGAGGCGATC
TAGCTGTTGTTGTTGGAAGAAACATCATTCATGGAAGTGATGGCCCCGAG
ACCGCCAAGGATGAGATTAAATTGTGGTTCAAACCCGAAGACTTGGTTAA
TTACACAAGCAATGCAGAGAAGTGGGTCTATGAATCCAAGTGATT
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