CK934906

Overview
NameCK934906
Unique NameCK934906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934906_ssr90 microsatellite CK934906_ssr90:90..103. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934906_ssr311 microsatellite CK934906_ssr311:311..334. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig527 contig Csv1_Contig527:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.135e-48
Identity = 79/178 (44.38%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  198 QQQPHNSTF-LLDALYCSEENWEDELRVDCFQVQDGGLIXXXXXXXXXXSFYFINKTKTIPVPVPMLHEQDLSWQDDELSTLLSKEVPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVE 728
            +++  N+ F +LD L+C EE+   E    C +  +               F F+N           L + D+ W DDELSTL+SK+ P  LY+ +  +  L   R +A+DW+ KV +HY F +LTALLAVNY DRF+ S + Q DKPWM+QL A+ACLSLAAKVEE +VP LLD QVE
Sbjct:    6 EEESQNAPFCVLDGLFCEEESEFHEQVDLCDESVE--------------KFPFLNLG---------LSDHDMLWDDDELSTLISKQEPC-LYDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVE 159          

HSP 2 Score: 81.2629 bits (199), Expect = 2.135e-48
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  728 DTKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLXRCDRILL 910
            + ++VFEAKTIQRME+LVLSTL W+M+PVTP+SF D+I RR   K +   EFL RC+ +LL
Sbjct:  160 EARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLL 220          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.047e-47
Identity = 83/179 (46.37%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  198 QQQPHNSTF-LLDALYCSEENWEDELRVDCFQVQDGGLIXXXXXXXXXXSFYFINKTKTIPVPVPMLHEQDLSWQDDELSTLLSKE-VPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVE 728
            ++   N  F +LD LYC EE    E  +D     DG L            F F+          P+L      W DDE+ +L+SKE   N  +     +  L   R EA+DW+L+V +HY FT+LTA+LAVNY DRF+ S +LQ DKPWM+QL AVA LSLAAKVEE QVPLLLDLQVE
Sbjct:    7 EEASQNGAFCVLDGLYCEEETGFVEDDLD----DDGDLDFLEKSDESVVKFQFL----------PLLDM--FLWDDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVE 169          

HSP 2 Score: 80.4925 bits (197), Expect = 1.047e-47
Identity = 34/61 (55.74%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  728 DTKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLXRCDRILL 910
            + +++FEAKTIQRME+L+LSTLQW+M+PVTP+SF D+I RR G K +   +F  +C+R+L+
Sbjct:  170 EARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLI 230          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.436e-35
Identity = 84/176 (47.73%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  201 QQPHNSTFLLDALYCSEENWEDELRVDCFQVQDGGLIXXXXXXXXXXSFYFINKTKTIPVPVPMLHEQDLSWQDDELSTLLSKEVPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVE 728
            ++  +++FLLDALYC EE W+DE      +V++   +                   +   P  +L +QDL W+D++L TL SKE    L  +   +  LS  R EAV W+L+VNAHY F+ L A+LA+ YLD+F+ S+ LQRDKPWM QL +VACLSLAAKVEETQVPLLLD QVE
Sbjct:   10 REEQSNSFLLDALYCEEEKWDDEGE----EVEENSSL------------------SSSSSPFVVL-QQDLFWEDEDLVTLFSKEEEQGLSCL--DDVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVE 160          

HSP 2 Score: 93.5893 bits (231), Expect = 1.694e-18
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  638 DGPTSCRGLSLACCQSGG---DTSAPLIRPAS-GDTKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLXRCDRILL 910
            D P   + +S+AC        +T  PL+      +TK+VFEAKTIQRME+L+LSTL+WKM+ +TP+SF+D+I RRLGLK    W+FL +C R+LL
Sbjct:  127 DKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLL 221          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.017e-34
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 3
Query:  384 VPMLHEQDLSWQDDELSTLLSKEV---PNRLY--NILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEIPNLYLRPK 755
            +PM+     S  +D +  +L +E+   P   Y   +L  +  LS  R++A+DW+LKV AHY F  L   L++NYLDRFL S++L +DK W AQL AV+CLSLA+K+EET VP ++DLQVE P      K
Sbjct:   52 IPMMGSSSSSLSEDRIKEMLVREIEFCPGTDYVKRLLSGDLDLS-VRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAK 179          

HSP 2 Score: 61.6178 bits (148), Expect = 1.017e-34
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  728 DTKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLXRCDRILL 910
            D KFVFEAKTI+RME+LV++TL W++  +TP SF+DY   +  + G++    + R  R +L
Sbjct:  171 DPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDK--ISGHVSENLIYRSSRFIL 229          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.429e-33
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 3
Query:  501 RARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQV 725
            R R +A+DW+ KV+++YSF  LTA LAVNYLDRFL  +QL   K WM QL AVACLSLAAK+EET VP  LDLQV
Sbjct:  101 RVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQV 175          

HSP 2 Score: 64.3142 bits (155), Expect = 1.429e-33
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 2
Query:  725 GDTKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRL 853
            G+ ++VFEAKTIQRME+LVLSTL+W+M  VTP S++DY  R L
Sbjct:  176 GEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLREL 218          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.694e-30
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 3
Query:  501 RARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEIP 734
            R RSEA+ W+ +V  +Y+F+++TA LAVNYLDRFL  ++L   + WM QL +VACLS+AAK+EET VP  LDLQ+  P
Sbjct:  108 RVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEP 185          

HSP 2 Score: 58.151 bits (139), Expect = 8.694e-30
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 2
Query:  725 GDTKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLXRCDRILL 910
            G+ +F+FE +TI RME+LVL+ L W+M  VTP S++DY  R+L         +L R   ++L
Sbjct:  183 GEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELIL 244          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.368e-29
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  411 SWQDDELSTLLSKE---VPNRLY-NILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQV 725
            SW  D ++  +  E   VP   Y +  +T    + AR ++V W+LKV A+Y+F  LTA LAVNY+DRFL++ +L     W  QL AVACLSLAAK+EE  VP L D QV
Sbjct:   46 SWPGDSIACFIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQV 154          

HSP 2 Score: 55.8398 bits (133), Expect = 9.368e-29
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 2
Query:  734 KFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLXRCDRILL 910
            K++FEAKTI+RME+LVLS L W++  VTP  F+ + A ++   G     F+     I+L
Sbjct:  158 KYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIIL 216          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.003e-27
Identity = 48/75 (64.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  507 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFS--FQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQV 725
            R  A+DW+ KV A+YSF  L A LAVNYLDRFL S  F +  D PWM QL  VACLSLAAK+EET  P  LDLQV
Sbjct:  104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQV 178          

HSP 2 Score: 55.0694 bits (131), Expect = 1.003e-27
Identity = 23/59 (38.98%), Postives = 40/59 (67.80%), Query Frame = 2
Query:  734 KFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLXRCDRILL 910
            ++VF+A+TI RMEI+VL+TL+W+M  VTP +++ +   ++     +  E + RC  I+L
Sbjct:  182 EYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNRITSELISRCTEIIL 240          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.759e-27
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  507 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQV 725
            R +A+DW+ KV+++Y+F  L+  LAVNYLDRFL SF L  D+ WM QL +V+CLSLA K+EET VPL +DLQV
Sbjct:   95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQV 167          

HSP 2 Score: 49.6766 bits (117), Expect = 3.759e-27
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 2
Query:  728 DTKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDY 838
            D ++VFEA+ I+RME++V+ TL+W++  VTP SF+ Y
Sbjct:  169 DAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGY 205          
BLAST of CK934906 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.919e-26
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  504 ARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEIPNLYLRPK 755
            AR+E+V W+LKV  +  F  LTA LAVNY+DRFL    L   + W  QL AVACLSLAAK+EET VP LLDLQVE       P+
Sbjct:   81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSRYVFEPR 164          

HSP 2 Score: 47.3654 bits (111), Expect = 8.919e-26
Identity = 18/38 (47.37%), Postives = 29/38 (76.32%), Query Frame = 2
Query:  731 TKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIA 844
            +++VFE +TI RME L+L+ L W++  VTP +F+D+ A
Sbjct:  157 SRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFFA 194          
The following BLAST results are available for this feature:
BLAST of CK934906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CCD33_ARATH2.135e-4844.38Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD32_ARATH1.047e-4746.37Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD31_ARATH4.436e-3547.73Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD21_ARATH1.017e-3445.74Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD41_ORYSJ1.429e-3366.67Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD42_ORYSJ8.694e-3056.41Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD11_ARATH9.368e-2947.71Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD23_ORYSJ1.003e-2764.00Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]
CCD22_ORYSJ3.759e-2760.27Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD21_ORYSJ8.919e-2657.14Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_D04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934906 ID=CK934906; Name=CK934906; organism=Citrus sinensis; type=EST; length=911bp
GCGGGGACAGAAACAGAGAAACCACAAATAAANNNCAGCCTTTGGGCCAT
TGTTCAGTCAGTCCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAG
AGAGGAAGGTGAGATGCATCAACTCCAAACACTCTCTCTTGTTGTATGAT
GAAACAAGATCTAAACCTCTTCTTCTCAGAAGAAGATGGCTGCTCACCAA
CAACAACCACATAACTCTACATTCCTTCTGGATGCTCTCTATTGCTCTGA
AGAGAATTGGGAGGACGAACTGAGAGTTGATTGCTTTCAAGTTCAAGATG
GAGGACTAATAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAAGTTTCTAT
TTTATTAATAAAACTAAAACAATCCCAGTTCCCGTTCCAATGCTGCATGA
ACAAGACTTGTCTTGGCAGGATGATGAACTTTCCACCTTACTATCCAAAG
AAGTACCAAACCGGTTGTATAATATCCTGAAGACCAATCCATCTCTGTCT
AGGGCTCGCAGTGAGGCCGTGGATTGGATGCTGAAGGTCAATGCTCACTA
CTCATTCACTGCTCTCACCGCACTTCTTGCTGTCAACTATCTTGATAGGT
TCCTCTTCAGCTTCCAGTTGCAGAGAGATAAGCCGTGGATGGCCCAACTA
GCTGCCGTGGCTTGTCTCTCGCTTGCTGCCAAAGTGGAGGAGACACAAGT
GCCCCTCTTATTAGACCTGCAAGTGGAGATACCAAATTTGTATTTGAGGC
CAAAACTATCCAGAGGATGGAGATTTTGGTGCTCTCCACGCTTCAGTGGA
AGATGAATCCTGTAACCCCTCTTTCTTTTCTTGATTACATTGCCAGGAGA
CTTGGGCTTAAGGGTTATCTCTGTTGGGAGTTTCTCANGAGATGCGACCG
TATCCTTCTTT
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