CK934920

Overview
NameCK934920
Unique NameCK934920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934920 vs. ExPASy Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 53/163 (32.52%), Postives = 78/163 (47.85%), Query Frame = 3
Query:  291 LADSLSEKMKTLHYPSSEECCIYRVPQSKRCLHPSHYTPPMLSISPLHHTNPELQAMEVHKLRYLHHFLRRTKVSMAHFLAFIK---EREAKLRNCYAETIHLESDEFVTMILVDSVFIIELFLRDYDPNFRTDDDRILGKSGLSLLRIEMXDDLYLLENQLP 770
            L+    E +  L     E CCI+RVP+S   L+P  Y P ++SI P H+    LQ ++ HK R L  FL   K         +K   + E K+R  Y+E +    D  + M+++D  FI+ +FL     N    +D I     +  L   +  DL LLENQ+P
Sbjct:   27 LSSGSKEPVLLLESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFL-IMSGNIELSEDPIF---SIPWLLSSIQSDLLLLENQVP 184          
BLAST of CK934920 vs. ExPASy Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 53/168 (31.55%), Postives = 82/168 (48.81%), Query Frame = 3
Query:  273 LIDMEKLADSLSEKMKTLHYPSSEECCIYRVPQSKRCLHPSHYTPPMLSISPLHHTNPELQAMEVHKLRYLHHFLRRTKVSMAHFLA-FIKEREAKLRNCYAETIHLESDEFVTMILVDSVFIIELFLRDYDPNFRTDDDRILGKSGLSLLRIEMXDDLYLLENQLPL 773
            +I+++K  D+  E+    H        I+ VP++  C HP  YTP  +SI P H   PEL  ME +KL        +      H L   ++  E K+R CY + I    +  + ++ VDS F+IE FL+ Y  +FR  +  I       +LR     D+ ++ENQ+PL
Sbjct:   22 VINVQKSLDAELEE----HDLEEVTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIE-FLKIY--SFRKVETLINRVGHNEILR-----DIMMIENQIPL 177          
The following BLAST results are available for this feature:
BLAST of CK934920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3720_ARATH7.643e-1432.52UPF0481 protein At3g47200 OS=Arabidopsis thaliana ... [more]
Y3264_ARATH7.154e-1231.55Putative UPF0481 protein At3g02645 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004225_B03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934920 ID=CK934920; Name=CK934920; organism=Citrus sinensis; type=EST; length=793bp
GGGGACCTCCAATTTCCCAGAGAAAATCACATCTTCTTCCTAGCCAAACA
CCCACATCTTCGAAAAAAGAGAGACATTCCACAGTGGTAAACTACAGACA
GCAGTGTGAGTTTTCATTTCATCCTAATTTTTTGTACATGTAAGTTTCTA
ATTAATACTCGATCTTTTAAATCTTTAAGCACAGCATGTTTCTGGAAGCT
GTTCTCATTAACTTTGTTGCTAAACACCTACACAGCAACAAGCAATAGAA
AATGGAAAACATGGAGCATGCATTGATTGATATGGAGAAGTTAGCAGATT
CTTTGAGTGAGAAGATGAAGACCTTGCATTATCCCTCATCCGAAGAGTGT
TGCATCTACAGAGTCCCTCAGTCCAAACGGTGTTTACATCCAAGTCATTA
CACACCGCCAATGCTTTCAATTAGCCCTCTTCATCATACCAACCCCGAGT
TACAAGCTATGGAAGTGCATAAGCTAAGGTACCTGCATCACTTTCTCCGG
CGAACTAAGGTAAGCATGGCGCATTTCCTTGCATTTATAAAGGAAAGGGA
AGCAAAATTGCGGAATTGTTATGCAGAAACCATTCATCTCGAGAGTGACG
AGTTCGTTACCATGATTTTGGTGGATTCTGTCTTTATCATTGAATTATTT
CTGAGAGACTATGACCCTAATTTCAGAACCGATGATGATCGCATACTTGG
GAAATCAGGCTTAAGTCTCTTGCGCATAGAAATGNNNGATGACTTGTACT
TGCTGGAAAATCAGCTTCCCTTATCATTCTCAATGAGTTGTTT
back to top