CK934937

Overview
NameCK934937
Unique NameCK934937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7653 contig Csv1_Contig7653:3..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934937 vs. ExPASy Swiss-Prot
Match: LEC2_CLALU (Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.040e-12
Identity = 78/270 (28.89%), Postives = 117/270 (43.33%), Query Frame = 2
Query:   35 MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYG--AIESSG-ALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSFID------TTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPL----AVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDV--DLKSGRAIQVRIYYNPDFGQLSTYAAYSGETLVK--VIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 790
            + F+ L  + L   +SS       +SF+F +F  D  D   LI  G   I S G +L +T       P+R  VGR LY  PL L  S  +      TT T  +S   + T+  GDG+ F  A  +        G  LGL S        L    AVE DT +N N                + N + S   V    ++G     +I YN D  +LS  ++Y      +   +   ++L   +P  V VGF+ +TG ++++H +++WTFNS
Sbjct:   20 LAFITLFLMLLNRVNSS-----DSLSFTFDNFRPDQRD---LILQGDAKISSGGDSLQLTKTDTSGKPVRGSVGRALYYTPLHLWDSSTNRLASFQTTFTFVLS---SPTNNPGDGIAFFIAPPETTIPPGSSGGLLGLFSPDNALNNSLNQIVAVEFDTFVNNN------WDPSHRHIGIDVNTIKSSATVRWQRENGSLATAQISYNSDTKKLSVVSSYPNTQANEDYTVSYDVDLKTELPEWVRVGFSGSTGGYVQNHNILSWTFNS 272          
BLAST of CK934937 vs. ExPASy Swiss-Prot
Match: LEC_ERYCO (Lectin OS=Erythrina corallodendron PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 77/273 (28.21%), Postives = 115/273 (42.12%), Query Frame = 2
Query:   20 LAEQKMIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPI-RKVGRVLYGKPLSLQRSFIDTTITIK----ISRHQNYT-DRAGDGMTFIFASDKNGPSAKGVGEYLGL--QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLD--VDLKSGRAIQVRIYYNPDFGQLSTYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFN-SLP 796
            +A  K+  +L LS+ L     + ++    ISFSF  F   + DN TL     I  SG L +T      +P     GR LY KP+ +      T  + +     S  Q YT     DG+ F     K+ P A+G G YLG+   S   + +  L VE DT  N                  + N + S+      L +G+   V I Y+     L     Y     +  I + +++  ++P  V VG + ATG   D  E+H+V +W+F  SLP
Sbjct:    1 MATYKLCSVLALSLTLFLLILNKVNSVETISFSFSEFEPGN-DNLTLQGAALITQSGVLQLTKINQNGMPAWDSTGRTLYAKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKP-AQGYG-YLGIFNNSKQDNSYQTLGVEFDTFSNP------WDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFQASLP 264          
BLAST of CK934937 vs. ExPASy Swiss-Prot
Match: LEC2_CYTSC (2-acetamido-2-deoxy-D-galactose-binding seed lectin 2 OS=Cytisus scoparius PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 71/245 (28.98%), Postives = 102/245 (41.63%), Query Frame = 2
Query:  107 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSL-------QRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGL---QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSTYAAY-SGETLVK---VIEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNS 790
            +SFSF  F  D   N  L     I  +G L +T           +GR LY  P+ +       + SF  T  +  IS   N +  A DG+ F  A     P +   G YLGL    SS       +AVE DT  N                  +S  V+S      K+G    V I Y P    L     Y SG+T  K   +I   ++L   +P  V +GF+A TG   +++E+H++++W+F S
Sbjct:    4 LSFSFTKFKTDQ-KNLILQRDALITPTGKLQLTTVENGKPAAYSLGRALYSTPIHIWDKSTGDEASFA-TFFSFVISDAPNPSTAATDGLAFFLAPADTQPQS--AGGYLGLFEKDSSYNSSNQIVAVEFDTYYNSAWDPQTNPHIGIDVNTIKSKKVSSW---GFKNGNVATVLITYQPSSKSLVASLVYPSGQTSDKTSYIISANVDLKATVPEWVRIGFSATTGQTDNYIETHDILSWSFKS 241          
BLAST of CK934937 vs. ExPASy Swiss-Prot
Match: LEC_ERYCG (Lectin OS=Erythrina crista-galli PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 73/244 (29.92%), Postives = 104/244 (42.62%), Query Frame = 2
Query:  107 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPI-RKVGRVLYGKPLSLQRSFIDTTITIK----ISRHQNYT-DRAGDGMTFIFASDKNGPSAKGVGEYLGL--QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLD--VDLKSGRAIQVRIYYNPDFGQLSTYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFN-SLP 796
            ISFSF  F   + DN TL     I  SG L +T      +P     GR LY KP+ +  S   T  + +     S  Q YT     DG+ F     K+ P A+G G YLG+   S   + +  LAVE DT  N                  + N + S+      L +G+   V I Y+     L     Y     +  I + +++  ++P  V VG + ATG   D  E+H+V +W+F  SLP
Sbjct:    4 ISFSFSEFEPGN-DNLTLQGAALITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHMWDSTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKP-AQGYG-YLGVFNNSKQDNSYQTLAVEFDTFSNP------WDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDAPSKILHVVLVYPSSGAIYTIAEIVDVKQVLPDWVDVGLSGATGAQRDAAETHDVYSWSFQASLP 238          
BLAST of CK934937 vs. ExPASy Swiss-Prot
Match: LECS_SOPJA (Seed lectin OS=Sophora japonica PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 78/273 (28.57%), Postives = 114/273 (41.76%), Query Frame = 2
Query:   14 VALAEQKMIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYG--AIESSGALSITPGPPPNLPI-RKVGRVLYGKPLSLQRSFIDTTITIKISRH----QNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPG--DKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDL--KSGRAIQVRIYYNPDFGQLSTYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNS 790
            V LA     FLLLL+   +  S+ ILS      FSFP FA +  D   L+  G   + S G L +T      +PI    GR LY  P+ +         +   S           ++ DG+ F  A   N     G G +LGL  S G    +  +AV+ DT +N                  + N +NS   V    ++G    V I Y      L+    Y       ++   ++L  I+P  V VGFTAATG    ++E+H+V++W+F S
Sbjct:   19 VVLAISITFFLLLLN---KVNSAEILS------FSFPKFASNQED---LLLQGDALVSSKGELQLTT-VENGVPIWNSTGRALYYAPVHIWDKSTGRVASFATSFSFVVKAPVASKSADGIAFFLAPPNNQIQGPG-GGHLGLFHSSGYNSSYQIIAVDFDTHINA-------WDPNTRHIGIDVNSINSTKTVTWGWQNGEVANVLISYQAATETLTVSLTYPSSQTSYILSAAVDLKSILPEWVRVGFTAATGLTTQYVETHDVLSWSFTS 270          
The following BLAST results are available for this feature:
BLAST of CK934937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LEC2_CLALU1.040e-1228.89Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1[more]
LEC_ERYCO1.962e-1128.21Lectin OS=Erythrina corallodendron PE=1 SV=3[more]
LEC2_CYTSC1.962e-1128.982-acetamido-2-deoxy-D-galactose-binding seed lecti... [more]
LEC_ERYCG2.563e-1129.92Lectin OS=Erythrina crista-galli PE=1 SV=1[more]
LECS_SOPJA2.563e-1128.57Seed lectin OS=Sophora japonica PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004224_H03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934937 ID=CK934937; Name=CK934937; organism=Citrus sinensis; type=EST; length=900bp
GGGGATTCAATAAGTAGCCCTCGCAGAACAAAAAATGATTTTCCTACTAC
TCCTCTCAGTTTTTCTTCGCGGAGCTTCTTCATCAATCCTTTCCGAAGAC
ACACCTATTAGCTTCTCATTTCCCTCATTCGCCAAAGACAGTTGTGACAA
TAAGACCCTCATTTGCTACGGAGCGATTGAAAGTTCCGGCGCCTTAAGCA
TCACACCAGGCCCTCCACCAAACCTGCCGATCAGAAAGGTTGGACGGGTT
TTATACGGCAAGCCTCTGAGTTTACAGCGATCTTTTATTGATACCACCAT
CACCATTAAGATCTCACGCCATCAGAATTACACTGATCGTGCCGGAGATG
GCATGACGTTCATTTTTGCAAGCGATAAAAACGGTCCATCAGCAAAGGGC
GTCGGCGAATATCTTGGACTGCAGTCTTCACCAGGCGATAAATTTCCTCC
ATTAGCCGTGGAGCTGGACACATGCCTGAACAAGAACCTGAATGATCCAG
ATGATAACCATATTGGCATCGACATAAACGGAATCGAATCAAATCCAGTT
AATAGTCTGCTTGACGTTGATCTCAAAAGTGGACGAGCAATCCAGGTTCG
AATTTATTACAATCCAGACTTTGGACAACTCTCTACTTATGCGGCATATT
CGGGGGAAACACTTGTGAAGGTGATTGAAAAACCCATTAACCTGTCAGAT
ATAATTCCAACGCCCGTCTATGTTGGATTCACAGCAGCTACGGGGGACTT
TTTAGAAAGCCATGAGGTTATAAATTGGACCTTCAACTCGCTCCCAGTGC
CGCCTTCTCTCAAGGAGAAAAACCTGGTGATGCCAATATAATTCTAAACC
GTCCTTGAAAAACCATGTCACATAAATTATAATCAATAAATAATAATATC
back to top