CK934940

Overview
NameCK934940
Unique NameCK934940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length193
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934940 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.778e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 2 
Query:    5 DEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNE 166
            +EVVIHNIRLPKQSTVGDVINELKTKVELSHP+AELRLLEVFYHKIYKIF   E
Sbjct:  913 EEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKIYKIFPSTE 966
[Close]
BLAST of CK934940 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.071e-20
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:    5 DEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNE 166
            DEV+IHNIRLPKQSTVGDVINELKTKVELSH +AELRLLEVF+HKIYKIF   E
Sbjct:  912 DEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIYKIFPSTE 965
The following BLAST results are available for this feature:
BLAST of CK934940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP12_ARATH2.778e-2190.74Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH3.071e-2087.04Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004224_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934940 ID=CK934940; Name=CK934940; organism=Citrus sinensis; type=EST; length=193bp
GGGGGATGAGGTGGTAATTCACAACATTAGATTACCCAAACAGAGCACTG
TAGGTGATGTGATTAATGAACTTAAAACAAAGGTGGAATTATCCCATCCA
AATGCAGAACTAAGATTGCTTGAAGTTTTCTATCACAAGATATATAAGAT
CTTTGCCCCCAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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