CK934949

Overview
NameCK934949
Unique NameCK934949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig263 contig Csv1_Contig263:1..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934949 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.327e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  139 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKDD 312
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFKDD
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDD 62
The following BLAST results are available for this feature:
BLAST of CK934949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RAP22_ARATH3.327e-1153.85Ethylene-responsive transcription factor RAP2-2 OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004224_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934949 ID=CK934949; Name=CK934949; organism=Citrus sinensis; type=EST; length=313bp
GGGGATTCACTAAACACTTTAGAATCCAAAACTCTCTCAAGCCAACAAAA
GCAAATTTTTACATTTAACCCATTCTCTTCTAAAAATCTTTTCTCTTTAG
TCCCTGAACAAACCACAAAAAACGATAAACCCTTAACCATGTGTGGAGGT
GCTATCATTTCCGGCTACATCCCGCCCACCGTGCCGGGCCGTCCAAAGAA
GCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGA
AGTACTCAAAGCCGATCGTCGACGATGATTTCGAGGCTGATTTCCAAGGA
TTCAAGGACGATG
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