CK934961

Overview
NameCK934961
Unique NameCK934961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934961_ssr820 microsatellite CK934961_ssr820:820..831. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIP TIL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M+T PN+  RP  AAKDI  F FEH PKIF
Sbjct:   26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAMITTPNETNRPFAAAKDIVPFYFEHGPKIF 114

HSP 2 Score: 83.1889 bits (204), Expect = 2.191e-15
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 3 
Query:  504 PMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            P YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A++ DIC  T+AAPT+ P H+F T +++ GD   F+L+DG VA  +DP +
Sbjct:  123 PKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKSPELDAKMYDICYSTAAAPTFFPPHYFAT-NTSNGDKYEFNLVDGAVATVDDPAL 226
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PT2K3_SOLTU (Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.335e-25
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIP TIL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F FEH P IF
Sbjct:   26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 114

HSP 2 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 3 
Query:  474 IISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            I +S      PMYDGKY   + +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A++ DIC  T+AAPTY P H+FVT  S  GD   F+L+DG VA   DP +
Sbjct:  113 IFNSSGSIFGPMYDGKYFLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKSPELDAKMYDICYSTAAAPTYFPPHYFVTHTS-NGDKYEFNLVDGAVATVGDPAL 226
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PT2K1_SOLTU (Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.335e-25
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIP TIL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F FEH P IF
Sbjct:   14 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 102

HSP 2 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  504 PMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            PMYDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A++ DIC  T+AAP Y P H+FVT  S  GD   F+L+DG VA   DP +
Sbjct:  111 PMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKSPELDAKMYDICYSTAAAPIYFPPHYFVTHTS-NGDRYEFNLVDGAVATVGDPAL 214
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.050e-25
Identity = 55/89 (61.80%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIP TIL FLE +LQ++D   +AR+ADYFD++ GT TGGL+  M+T PN++ RP  AAKDI  F F+H PKIF
Sbjct:   14 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIF 102

HSP 2 Score: 88.9669 bits (219), Expect = 3.993e-17
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 3 
Query:  498 VRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDP 818
            V P YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A++ DIC  T+AAPTY P H+F T +++ GD   F+L+DG VAA DP
Sbjct:  110 VEPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKTPELDAKMYDICYSTAAAPTYFPPHYFAT-NTSNGDQYDFNLVDGDVAAVDP 212
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PT2K2_SOLTU (Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIP  IL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F FEH P IF
Sbjct:   26 GEMVTVLSIDGGGIKGIIPAVILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIIPFYFEHGPHIF 114

HSP 2 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  504 PMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            PMYDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A++ DIC  T+AAP Y P H+F+T  S  GD   F+L+DG VA   DP +
Sbjct:  123 PMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKSPELDAKMYDICYSTAAAPMYFPPHYFITHTS-DGDIYEFNLVDGAVATVGDPAL 226
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIPG IL FLE +LQ +D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F F+H P IF
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIF 114

HSP 2 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = 3 
Query:  480 SSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            SS  ++  P YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A+++DIC  T+AAPTY P H+F T +++ GD   F+L+DG VA   DP +
Sbjct:  116 SSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKSPELDAKMSDICYSTAAAPTYFPPHYFAT-NTSNGDKYEFNLVDGAVATVADPAL 227
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PAT03_SOLTU (Patatin-03 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIPG IL FLE +LQ +D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F F+H P IF
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIF 114

HSP 2 Score: 85.8853 bits (211), Expect = 3.380e-16
Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 3 
Query:  480 SSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            SS  ++  P YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + +    +A+++DIC  T+AAPTY P H+F T +++ GD   F+L+DG VA   DP +
Sbjct:  116 SSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LARSPELDAKMSDICYSTAAAPTYFPPHYFAT-NTSNGDKYEFNLVDGAVATVADPAL 227
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PT2K4_SOLTU (Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIP  IL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F FEH P IF
Sbjct:   14 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 102

HSP 2 Score: 86.2705 bits (212), Expect = 2.588e-16
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 
Query:  504 PMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            PMYDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + +    +A++ DIC  T+AAP Y P H+FVT  S  GD   F+L+DGGVA   DP +
Sbjct:  111 PMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAESPQLDAKMYDICYSTAAAPIYFPPHYFVTHTS-NGDRYEFNLVDGGVATVGDPAL 214
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PAT13_SOLTU (Patatin-13 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLS+DGGG+KGIIPG IL FLE +LQ +D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F F+H P IF
Sbjct:   26 GEMVTVLSVDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIF 114

HSP 2 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = 3 
Query:  480 SSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            SS  ++  P YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A+++DIC  T+AAPTY P H+F T +++ GD   F+L+DG VA   DP +
Sbjct:  116 SSTGQFFGPKYDGKYLMQVPQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKSPELDAKMSDICYSTAAAPTYFPPHYFAT-NTSNGDKYEFNLVDGAVATVADPAL 227
[Close]
BLAST of CK934961 vs. ExPASy Swiss-Prot
Match: PAT0_SOLTU (Patatin OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:   71 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFSFEHCPKIF 334
            G+ +TVLSIDGGG+KGIIP  IL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AAKDI  F FEH P IF
Sbjct:   26 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 114

HSP 2 Score: 83.1889 bits (204), Expect = 2.191e-15
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 3 
Query:  504 PMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVI 824
            P YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ ++   + +    +A++ DIC  T+AAP Y P HHFVT  S  G T  F+L+DG VA   DP +
Sbjct:  123 PRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAESPQLDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGAVATVGDPAL 226
The following BLAST results are available for this feature:
BLAST of CK934961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATT5_SOLTU8.027e-2664.04Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PT2K3_SOLTU2.335e-2562.92Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 ... [more]
PT2K1_SOLTU2.335e-2562.92Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 ... [more]
PT3K1_SOLTU3.050e-2561.80Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PT2K2_SOLTU8.875e-2561.80Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 ... [more]
PAT05_SOLTU8.875e-2561.80Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PAT03_SOLTU8.875e-2561.80Patatin-03 OS=Solanum tuberosum PE=2 SV=1[more]
PT2K4_SOLTU1.159e-2461.80Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 ... [more]
PAT13_SOLTU1.159e-2460.67Patatin-13 OS=Solanum tuberosum PE=2 SV=1[more]
PAT0_SOLTU1.159e-2461.80Patatin OS=Solanum tuberosum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004224_G01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934961 ID=CK934961; Name=CK934961; organism=Citrus sinensis; type=EST; length=888bp
GGGGACCTCAATATCAAGAAGCTTTTAATTTGAATCAAAACTCAAAATGA
TCGCTAGAACCATTGCCAAAGGCAAGAAAATAACCGTGCTAAGCATTGAT
GGAGGCGGTGTTAAAGGCATCATTCCTGGCACCATTTTAGCCTTTCTTGA
ATCCAGGCTTCAGGATTTGGATGGACCCAATGCGAGAATAGCAGACTATT
TTGATATAGTAGCAGGAACAAGCACAGGTGGGCTAATAGGCACCATGCTT
ACAGCTCCCAACAAGGACGGCAGACCTATGTATGCGGCTAAGGATATCAA
CAACTTCTCTTTTGAGCACTGTCCTAAAATTTTCCCTCAATTATCAAGGT
AATAATTGAGACTCCAGTTAAGTTCTTGCTAAAAATGCAACGATGGTGGC
CCATTGAGAGTTTAAGAACCGACTGATTAACAAAGTTTCTCTCCGAATCA
GGGGCGGAAACTTTCTAAGATCAATTATAAGCTCTTTGAGTAAGTGGGTA
CGGCCAATGTATGATGGGAAGTACATACGGAGTCTTACAAAGGAGATACT
AGAAGACATTACTATCAAAGACACCCTAACAAATTTGATCATTCCAACTT
TTGACATCAAGCGACTTCAGCCAGTGATCTTCTCAAGCAACGATGCCCTA
CAGGTGAAAAAAGGTGCATTGAAGAATGCCCGGCTAGCTGATATATGCGT
TGGCACCTCTGCAGCTCCCACCTACTTGCCGGCTCACCATTTTGTGACAA
AAGATTCAACAACCGGCGACACCTGCAGTTTTGATCTCATTGATGGCGGT
GTTGCGGCAAATGACCCGGTAATTAATTAATTAAATTCACACTCTATTAC
CACTATTTGATAGACGAGGAATTAATTAACATATACNA
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