CK934983

Overview
NameCK934983
Unique NameCK934983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:120..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934983 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.412e-49
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 3
Query:  333 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 587
            GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:   87 GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          

HSP 2 Score: 45.4394 bits (106), Expect = 1.412e-49
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   91 SSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGR 258
            SSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GR
Sbjct:    6 SSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGR 63          
BLAST of CK934983 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.741e-40
Identity = 72/84 (85.71%), Postives = 82/84 (97.62%), Query Frame = 3
Query:  336 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 587
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CK934983 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = 3
Query:  336 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 587
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CK934983 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  333 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 569
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of CK934983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH1.412e-4990.59Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE6.741e-4085.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU2.562e-3985.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.561e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004224_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934983 ID=CK934983; Name=CK934983; organism=Citrus sinensis; type=EST; length=707bp
GCGGCGCGGGNNNCTTNNNNGAACTTTGTANNNCANNNAAAAAAAAANNN
AAAATTTGGCGCTGCAGCAGGAGCCATGGCAGCCATGNNNTCTAGTGTAC
TCGCATGCAACTATGCCATTTCAGGCAGTGCTGGATCATCTGAGCTCAAT
GCAAAGATTGTTTCAGTTTCAACCCCGGCTGTGCATGGCCACAAAATGCC
TGTGATCAGAGCTCAACAAGTTGATGTTTCAAAAGAATCAAGAGGAACTG
ATGGAAGAGAGCTGCCATGGCTCTTCTAGCAGTTACCCTTTTCACCACAG
CTACTGCTGCTGCTTCTTCTTCTGCTAATGCTGGGGTCATCGATGAATAC
CTTGAGAGAAGCAAAGCCAACAAGGAATTGAATGACCAGAAGAGATTGGC
AACAAGTGGTGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGCACAT
GCAAGTTCCCTGAGAACTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAG
AAAGTGCCATTCATCTCGGATGATTTGGAATTGGAGTGCAAAGGGAAAGA
TAAATACAAGTGTGGTTCCAATGTTTTCTGGAAATGGTGAAGTGGGACAA
CTGATCTCTTTAAACATTTTATTTTACCCTCCCATGTATCTAAGTTTCCA
TTGAAGAACCTTTACTTGTGCTTAAAAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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