CK934986

Overview
NameCK934986
Unique NameCK934986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934986_ssr417 microsatellite CK934986_ssr417:417..431. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1752 contig Csv1_Contig1752:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.998e-47
Identity = 83/133 (62.41%), Postives = 107/133 (80.45%), Query Frame = 2
Query:   65 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTK-----LSKRVDANHHHHQNRSKV 448
            ++PCC K   +N+GAW   ED++L DYI+ +GEG WR +P+AAGL+RCGKSCRLRWMNYLRPD+KRGNF+++E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT      LS+ +D N H   N S V
Sbjct:    3 RSPCCEKAH-MNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINESVV 134          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.977e-46
Identity = 81/114 (71.05%), Postives = 98/114 (85.96%), Query Frame = 2
Query:   74 CCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA 415
            CC+K EG+ RGAW + ED  L  Y+KA+GEGKWR +P+ AGL+RCGKSCRLRW+NYLRP+I+RGN S DEEDLI+RLH+LLGNRW+LIAGRLPGRTDN+IKNYWN+ L +R  A
Sbjct:    6 CCAK-EGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRAGA 118          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.662e-46
Identity = 86/146 (58.90%), Postives = 106/146 (72.60%), Query Frame = 2
Query:   59 KRKTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR-----VDANHHHHQNRSKVEKKPKTRSSSG 481
            K+ TPCC+K  G+ RG W   ED+IL  +IK  GEG+WR +PK AGL RCGKSCRLRWMNYLRP +KRG  + DEEDLI+RLH+LLGNRW+LIAGR+PGRTDN+IKNYWNT L K+     +D   H   + + +  KP+   S G
Sbjct:   12 KKTTPCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIH-KPEEEVSGG 155          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.251e-44
Identity = 84/154 (54.55%), Postives = 107/154 (69.48%), Query Frame = 2
Query:   65 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA-----------NHHHHQNRSKVEKKPKTRSSSGVVSR 493
            ++PCC K    N+GAW   ED  LT YIKA+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNFS +E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT + +++ +           N  H  +   +  +   R   G V R
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAINSDHAASNITISFESAQRDDKGAVFR 155          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.633e-44
Identity = 86/130 (66.15%), Postives = 96/130 (73.85%), Query Frame = 2
Query:   56 GKRKTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDANHHHHQNRSK 445
            GKR T    + E LNRGAW   EDKIL DYI  +GEGKW  +P  AGLKRCGKSCRLRW NYLRP IKRGN S DEE+LI+RLH LLGNRW+LIAGRLPGRTDN+IKN+WN+ L KR+         R K
Sbjct:    2 GKRATTSVRREE-LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKRIK 130          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.633e-44
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 2
Query:   65 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR-----VDANHHHHQNRSK 445
            ++PCC K    N+GAW   ED+ L DYI+ +GEG WR +PK+AGL RCGKSCRLRW+NYLRPD+KRGNF+ DE+ +I++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT + ++     +D   H   N SK
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESK 133          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.633e-44
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 2
Query:   65 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA---NHHHHQNRSKVEKKPKT 466
            + PCC K  GL +G W   EDK+L  +I+ +G G WR +PK AGL RCGKSCRLRW+NYLRPDIKRGNFSK+EED I+ LH+LLGNRW+ IA RLPGRTDN+IKN W+T L KR+DA     H   +  K  KKPK+
Sbjct:    3 RAPCCEK-MGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKS 138          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.133e-44
Identity = 82/147 (55.78%), Postives = 105/147 (71.43%), Query Frame = 2
Query:   65 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR-----VDANHHHHQNRSKVEKKPKTRSSSGVVS 490
            ++PCC K    N+GAW   ED+ L  YIKA+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNF+++E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT + ++     +D   H     S   +  K      V S
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQESSASQDSKPTQLEPVTS 148          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.753e-44
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 2
Query:   65 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 409
            ++PCC K    NRGAW   ED+ L  YI+A+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNF+ DE+DLIV+LH LLGN+W+LIA RLPGRTDN+IKNYWNT + +++
Sbjct:    3 RSPCCEKAH-TNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKL 116          
BLAST of CK934986 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.059e-43
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 2
Query:   65 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTK-----LSKRVDANHHHHQN 436
            ++PCC K    N+GAW   ED  L  YI+A+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNF+++E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT      LS+ +D   H   N
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSIN 130          
The following BLAST results are available for this feature:
BLAST of CK934986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB3_ARATH5.998e-4762.41Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYBC_MAIZE2.977e-4671.05Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB5_ARATH8.662e-4658.90Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB1_HORVU1.251e-4454.55Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
TT2_ARATH1.633e-4466.15Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB6_ARATH1.633e-4459.85Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB4_ORYSJ1.633e-4461.31Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB4_ARATH2.133e-4455.78Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB38_MAIZE4.753e-4467.83Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB08_ANTMA1.059e-4362.02Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004224_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934986 ID=CK934986; Name=CK934986; organism=Citrus sinensis; type=EST; length=861bp
GGGGGGACACAGAACTCTTAATCGGAGAGGAAAAGTTGTTAAGAGTCAAA
TGGCGGGTAAGCGCAAGACTCCTTGCTGCTCTAAAGGGGAGGGACTCAAC
AGAGGAGCTTGGAAAGCCGTTGAAGACAAAATCCTCACAGATTACATCAA
GGCTTATGGTGAAGGAAAATGGAGGCACATTCCCAAAGCTGCAGGTCTTA
AGAGATGCGGGAAGAGTTGTAGGCTGCGGTGGATGAATTATCTAAGACCT
GACATCAAGAGAGGCAACTTTTCTAAAGATGAAGAAGATCTCATCGTTAG
ACTTCACAAGCTCTTAGGCAACAGATGGGCTCTTATAGCTGGGAGACTTC
CAGGACGAACAGATAATGATATCAAGAATTACTGGAACACCAAGTTATCC
AAGAGAGTAGACGCAAATCATCATCATCATCAAAACCGTTCCAAAGTTGA
GAAGAAACCAAAGACCAGATCGAGCTCAGGTGTTGTGTCGCGCCCCCAAT
ACAAAAAAACTGAGAAACATGACGCTGCTGGCGGTGTTGCTGATGACGAT
GATGATCGGGAGGCTCCAATTTTATTTGACTATGTGCCTGTACAATCTCA
GTGCAGTTATGGGTGTAAAGAAGAAAAATCCTCCGGCTCTGATCATGAGT
ACACGGTGGATTTTGATGTTGGGGGAAAAAGCCTCTTGGATCTTCTTGAT
GCTAATCTCAACAATCTTGACGATTTCGGCCATGACATTTACAATAACAT
GGACAATCATATTATTCAAGCCAGCCTGCAATCAAATTTGGGATTTTGGT
GACCTTTTCTTGAATCATCATATGACGAATGGATGATTTAATTGTTGCTG
CTTTCATTCAA
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