CK934987

Overview
NameCK934987
Unique NameCK934987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934987_ssr252 microsatellite CK934987_ssr252:252..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:6..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934987 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.010e-42
Identity = 97/167 (58.08%), Postives = 115/167 (68.86%), Query Frame = 2
Query:  161 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFCYAGPCCFGF 637
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR    G     F
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAF 186          
BLAST of CK934987 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.144e-29
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 2
Query:  281 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFCYAG 619
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRF   G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLG 213          

HSP 2 Score: 33.113 bits (74), Expect = 1.144e-29
Identity = 16/23 (69.57%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  600 GGFAMLGLVALAFTEFVKGGTLV 668
            G FAMLGLVALA TEF+ G   V
Sbjct:  207 GRFAMLGLVALAATEFITGAPFV 229          
BLAST of CK934987 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.315e-29
Identity = 75/173 (43.35%), Postives = 98/173 (56.65%), Query Frame = 2
Query:  104 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFCYAG 619
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRF   G
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLG 154          

HSP 2 Score: 30.4166 bits (67), Expect = 3.315e-29
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  600 GGFAMLGLVALAFTEFVKGGTLV 668
            G FAMLGLVALA TE + G   +
Sbjct:  148 GRFAMLGLVALAATEIITGAPFI 170          
BLAST of CK934987 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.327e-29
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  308 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFCYAG 619
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRF   G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIG 149          

HSP 2 Score: 28.8758 bits (63), Expect = 7.327e-29
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  600 GGFAMLGLVALAFTEFVKG 656
            G FAM+GLVALA TE + G
Sbjct:  143 GRFAMIGLVALAATEIITG 161          
BLAST of CK934987 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.849e-28
Identity = 77/188 (40.96%), Postives = 109/188 (57.98%), Query Frame = 2
Query:   92 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFCYAGPCCFGF 637
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRF   G     F
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAF 187          
BLAST of CK934987 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 56/116 (48.28%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  284 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFCYAG 619
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRF   G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIG 156          
The following BLAST results are available for this feature:
BLAST of CK934987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.010e-4258.08Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU1.144e-2953.91High molecular mass early light-inducible protein ... [more]
ELI9_HORVU3.315e-2943.35Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU7.327e-2955.24Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL1.849e-2840.96Desiccation stress protein DSP-22, chloroplastic O... [more]
CBR_DUNBA3.061e-1548.28Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004224_D06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934987 ID=CK934987; Name=CK934987; organism=Citrus sinensis; type=EST; length=786bp
GGGGAAGAAATTGCAAACAAGGAACCCGCCGACCTGAAGCACCCAATTCC
CGAATTATACTTTGTTCTGTTTTCTACTTCATAAATTAAAAATGGCCGCA
TCACTTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGAC
TGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGC
CTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGAT
GAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTGA
GCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGT
TTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATG
ATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGT
GTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTG
TTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTG
GAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGG
GAGGTTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGTT
AAGGGTGGCACCCTTGTTTAAGCTTAATTTTGTTTAGATCTGTAGATCTG
TATTTTTTTTAACTAATTAATGTATGAGATCCTACTGTAATTAAATCTCT
ATTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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