CK935000

Overview
NameCK935000
Unique NameCK935000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_ARATH (Histidine biosynthesis bifunctional protein hisIE, chloroplastic OS=Arabidopsis thaliana GN=At1g31860 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.415e-66
Identity = 125/178 (70.22%), Postives = 146/178 (82.02%), Query Frame = 3
Query:   24 RDNDMK-RNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAAS---KDGKPSWT 545
            RD  ++ R+ +VFA +   N N  LQ+KVD LLD +KWD+KGLAVAIAQNVDTGA+LMQGF NR+AL+TTISSRKATF+SRSRSTLWTKGETS NFIN+ D+++DCDRDSIIYLG PDGPTCHTG ETCYYTSV D L +    GN LA+TTLYSLES IS+RK  S   ++GKPSWT
Sbjct:   26 RDTKLRSRSNVVFACN--DNKNIALQAKVDNLLDRIKWDDKGLAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKGETSNNFINILDVYVDCDRDSIIYLGTPDGPTCHTGEETCYYTSVFDQLNNDEASGNKLALTTLYSLESIISKRKEESTVPQEGKPSWT 201          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_THET2 (Histidine biosynthesis bifunctional protein hisIE OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=hisI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 49/108 (45.37%), Postives = 73/108 (67.59%), Query Frame = 3
Query:  117 LDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKD 440
            L +V++D KGL   + Q+  TG +L   +ANR+AL  T+ +R++TF+SRSR  LW KGETS +   V ++ LDCD D+++Y   P GP CHTG  TC++ ++L+  KD
Sbjct:    3 LSAVRFDEKGLVPVVVQDARTGEVLTLAYANREALEETLRTRRSTFFSRSRQALWRKGETSGHTQEVVEVLLDCDGDAVVYRVLPQGPACHTGERTCFHRALLEGEKD 110          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_YERPE (Histidine biosynthesis bifunctional protein hisIE OS=Yersinia pestis GN=hisI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 57/150 (38.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:   69 TESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAA 518
            TE   N +   KVD L+            AI Q+  +G +LM G+ N++ALA T  + K TF+SR++  LWTKGE+S +F+NV +I+ DCD D+++ L KP GPTCH G+ +C+  +  D              + LY LE  ++ RK+A
Sbjct:    3 TEQQINQLDWEKVDHLMP-----------AIVQHAVSGEVLMMGYMNQEALAVTEKTGKVTFFSRTKQRLWTKGESSGHFLNVVNIYPDCDNDTLLILVKPIGPTCHLGNSSCFAPAASD-------------WSFLYQLEQLLASRKSA 128          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_PHOPR (Histidine biosynthesis bifunctional protein hisIE OS=Photobacterium profundum GN=hisI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 54/145 (37.24%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  114 LLDSVKWDN-KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKDGKPSWT 545
            L+ ++ W+   GL  A+ Q+  +G +LM G+ N++AL  T+ +++ TF+SR++  LWTKGETS N + ++ I LDCD+D+++    P GPTCH G+ TC+     +  ++QP      A+  L+ LE  ++ RK A  D + S+T
Sbjct:    3 LVTTINWEKVDGLVPAVIQDNTSGQVLMLGYMNKEALNKTLETKQVTFWSRTKERLWTKGETSGNVLELKSINLDCDQDTLLVKVNPVGPTCHLGTPTCFDNDA-EGKQEQP------ALVFLHQLEQVLANRKGA--DPESSYT 138          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_VIBPA (Histidine biosynthesis bifunctional protein hisIE OS=Vibrio parahaemolyticus GN=hisI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   99 SKVDRLLDSVKWDN-KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKD 527
            ++V  L + + W+   GL  AI Q+  +  +LM G+ N+DALA T  + + TF+SR++  LWTKGETS N + + +I LDCD D+++    P GPTCHTG+ TC+         D   Q  +  M  L+ LE  ++ RK+A  D
Sbjct:    6 AEVSSLSERINWEKVDGLVPAIVQDFQSSQVLMMGYMNQDALAKTGETGQVTFFSRTKERLWTKGETSGNVLQLVNISLDCDNDTLLVRVNPIGPTCHTGTTTCW---------DGDAQEES-QMVWLHQLEQLLAARKSADPD 139          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_HAEIN (Histidine biosynthesis bifunctional protein hisIE OS=Haemophilus influenzae GN=hisI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  117 LDSVKWDN-KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAA 518
            +  + W    GL   I QN+ T  +LM G+ N +AL  TI  RK TF+SR++  LWTKGE S NF+NV+++ LDCD D+++ L  P G TCHTG  +C++       +++  Q  N A      LE  + ++K A
Sbjct:    3 ITKIDWQKVNGLLPVIIQNISTREVLMLGYMNEEALTKTIKERKVTFFSRTKQRLWTKGEISGNFLNVEEMSLDCDNDTLLILVDPIGATCHTGEYSCFHQFTSPQSENKKQQFANWAW--FIKLEQHLKEKKNA 135          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_SHISS (Histidine biosynthesis bifunctional protein hisIE OS=Shigella sonnei (strain Ss046) GN=hisI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.140e-22
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   90 VLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKDGKPSWT 545
            +L  +  R LD  K D  GL   I Q+  +G +LM G+ N +AL  TI S K TF+SR++  LWTKGETS NF+NV +I  DCD D+++ L  P GPTCH G+ +C+  +    L              LY LE  +++RK+A  D + S+T
Sbjct:    1 MLTEQQRRELDWEKTD--GLMPVIVQHAVSGEVLMLGYMNPEALDKTIESGKVTFFSRTKQRLWTKGETSGNFLNVVNIAPDCDNDTLLVLANPIGPTCHKGTSSCFGDTAHQWL-------------FLYQLEQLLAERKSA--DPETSYT 135          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_ECO57 (Histidine biosynthesis bifunctional protein hisIE OS=Escherichia coli O157:H7 GN=hisI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.140e-22
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   90 VLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKDGKPSWT 545
            +L  +  R LD  K D  GL   I Q+  +G +LM G+ N +AL  TI S K TF+SR++  LWTKGETS NF+NV +I  DCD D+++ L  P GPTCH G+ +C+  +    L              LY LE  +++RK+A  D + S+T
Sbjct:    1 MLTEQQRRELDWEKTD--GLMPVIVQHAVSGEVLMLGYMNPEALDKTIESGKVTFFSRTKQRLWTKGETSGNFLNVVNIAPDCDNDTLLVLANPIGPTCHKGTSSCFGDTAHQWL-------------FLYQLEQLLAERKSA--DPETSYT 135          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS3_ERYLH (Phosphoribosyl-AMP cyclohydrolase OS=Erythrobacter litoralis (strain HTCC2594) GN=hisI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.795e-22
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  129 KWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV-LDALKD 440
            K+D+ GL  A+ Q+VDT  +LM  F N DAL  T  +  A F+SRSR TLW KG TS N + V  + +DCD+D++I L +P GP CHTG+ TC+Y  +   AL+D
Sbjct:   18 KFDSDGLLTAVVQHVDTREVLMVAFMNADALDATRKTGIAHFFSRSRQTLWKKGGTSGNTLAVSQVLVDCDQDAVILLVEPAGPACHTGARTCFYRELDCGALQD 122          
BLAST of CK935000 vs. ExPASy Swiss-Prot
Match: HIS2_VIBVY (Histidine biosynthesis bifunctional protein hisIE OS=Vibrio vulnificus (strain YJ016) GN=hisI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.795e-22
Identity = 56/147 (38.10%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   90 VLQSKVDRLLDSVKWDN-KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKD 527
            V  ++V  L + + W+   GL  AI Q+  +  +LM G+ N+DALA T  + + TF+SR++  LWTKGETS N + + ++ LDCD D+++    P GPTCHTG+ TC+     D    +  Q     M  L+ LE  ++ RK+A  D
Sbjct:    3 VKAAEVSSLAERINWEKVDGLVPAIVQDFQSSQVLMMGYMNQDALAKTGETGQVTFFSRTKERLWTKGETSGNVLQLVNMSLDCDNDTLLVKVNPIGPTCHTGTTTCW-----DGDPQEESQ-----MVWLHQLEQLLAARKSADPD 139          
The following BLAST results are available for this feature:
BLAST of CK935000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
HIS2_ARATH2.415e-6670.22Histidine biosynthesis bifunctional protein hisIE,... [more]
HIS2_THET27.859e-2545.37Histidine biosynthesis bifunctional protein hisIE ... [more]
HIS2_YERPE1.255e-2238.00Histidine biosynthesis bifunctional protein hisIE ... [more]
HIS2_PHOPR1.255e-2237.24Histidine biosynthesis bifunctional protein hisIE ... [more]
HIS2_VIBPA1.639e-2238.89Histidine biosynthesis bifunctional protein hisIE ... [more]
HIS2_HAEIN1.639e-2239.26Histidine biosynthesis bifunctional protein hisIE ... [more]
HIS2_SHISS2.140e-2240.79Histidine biosynthesis bifunctional protein hisIE ... [more]
HIS2_ECO572.140e-2240.79Histidine biosynthesis bifunctional protein hisIE ... [more]
HIS3_ERYLH2.795e-2248.57Phosphoribosyl-AMP cyclohydrolase OS=Erythrobacter... [more]
HIS2_VIBVY2.795e-2238.10Histidine biosynthesis bifunctional protein hisIE ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004224_B07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935000 ID=CK935000; Name=CK935000; organism=Citrus sinensis; type=EST; length=609bp
GGGGGACTGGTAGTGGTCGCTGCAGAGATAATGACATGAAGAGAAATTGT
CTTGTGTTTGCCTCTTCTACGGAATCAAATTCTAATCCCGTCCTTCAATC
AAAAGTTGACAGGCTGCTAGACAGTGTAAAATGGGACAACAAAGGTTTGG
CTGTGGCTATAGCTCAAAATGTCGACACAGGAGCCATATTAATGCAAGGA
TTTGCAAACAGAGATGCTCTAGCTACAACCATTTCCTCTCGAAAGGCGAC
ATTCTACAGTCGTTCAAGGTCAACATTGTGGACAAAGGGAGAGACTTCCC
AGAATTTCATCAATGTTCAGGACATCTTTCTTGATTGTGATCGTGACTCT
ATTATATACCTCGGAAAGCCCGATGGGCCTACCTGCCACACAGGGTCAGA
AACTTGCTACTACACATCCGTCCTTGATGCCCTGAAAGATCAGCCGGTTC
AAGGAAATAATTTGGCAATGACAACGTTGTACTCGTTAGAGTCCACAATT
TCCCAGAGAAAAGCAGCATCGAAAGATGGGAAACCTTCTTGGACTAAACG
ATTATTACTCGATAGCAAATTGCTGTGCCCTAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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