CK935006
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CITSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis GN=ndhD PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 2.836e-42 Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMA GMILTPIYS Sbjct: 346 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_VITVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.833e-39 Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIR YLDEMGG+AIP+PKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQKF LMPKI+ITFVMA GMILTPIYS Sbjct: 346 FFLAGTSYDRIRLIYLDEMGGIAIPMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_GOSHI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium hirsutum GN=ndhD PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.456e-38 Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDR+R YLDEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMA GMILTPIYS Sbjct: 346 FFLAGTSYDRMRLVYLDEMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_GOSBA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium barbadense GN=ndhD PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.456e-38 Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDR+R YLDEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMA GMILTPIYS Sbjct: 346 FFLAGTSYDRMRLVYLDEMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_NANDO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nandina domestica GN=ndhD PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 7.228e-38 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIR YLDEMGG+AIP+PKIFTLFS SMASLALPGMSGFVAEL+VFFGIITS+KFFLMPKI+ITFV A GMILTPIYS Sbjct: 346 FFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFVAELVVFFGIITSEKFFLMPKILITFVTAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CARPA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya GN=ndhD PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 9.441e-38 Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIR YLDEMGG+AI +PKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLM KI+ITFVMA GMILTPIYS Sbjct: 346 FFLAGTSYDRIRLVYLDEMGGMAISMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMAKILITFVMAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_PELHO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Pelargonium hortorum GN=ndhD PE=3 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 1.233e-37 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIR + DEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQKF LMPKI+ITFVMA GMILTPIYS Sbjct: 346 FFLAGTSYDRIRLGFFDEMGGMAVAIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_PANGI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng GN=ndhD PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.103e-37 Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIR YLDEMGG+AIP+PKIFT+F+ SMASLALPGMSGFVAELIVFFGIITSQK+ LMPKI+ITFVMA GMILTPIYS Sbjct: 346 FFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFTSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAIGMILTPIYS 433
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_BUXMI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Buxus microphylla GN=ndhD PE=3 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 2.103e-37 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIR YLDEMGG+AI +PKIFT+FS SMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMA GMILTPIYS Sbjct: 347 FFLAGTSYDRIRLIYLDEMGGIAIQMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYS 434
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CALFG (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhD PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 6.119e-37 Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = -2 Query: 5 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIYS 268 FFLAGTSYDRIR YLDEMGG+AIP+PKIFT+FS SMASLALPGMSGFVAEL+VFFGIITS K+ LMPKIVI+FVMA GMILTPIYS Sbjct: 348 FFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGIITSSKYLLMPKIVISFVMAIGMILTPIYS 435 The following BLAST results are available for this feature:
BLAST of CK935006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 137
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935006 ID=CK935006; Name=CK935006; organism=Citrus sinensis; type=EST; length=269bpback to top |