CK935014

Overview
NameCK935014
Unique NameCK935014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935014_ssr27 microsatellite CK935014_ssr27:27..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK935014 vs. ExPASy Swiss-Prot
Match: LPAT5_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 85/123 (69.11%), Postives = 98/123 (79.67%), Query Frame = 1 
Query:  328 KDVKKHRPLTPIRVFRGLICLFVMLSTAFTMIIYCGFPSAIVLRLLSIHYSRKLASFFFGAWLALWPFLFEKINKTKVVFCGETVPAKERVLLIANHRTEVDWMYLWDFAWRKGCHGYIKYIL 696
            K V     L+ IRV RG+ICL V++STAF M+I+ GF SA+VLRL SI YSRK  SFFFG+WLALWPFLFEKINKTKV+F G+ VP ++RVLLIANHRTEVDWMY WD A RKG  G IKY+L
Sbjct:    4 KSVPNSDKLSLIRVLRGIICLMVLVSTAFMMLIFWGFLSAVVLRLFSIRYSRKCVSFFFGSWLALWPFLFEKINKTKVIFSGDKVPCEDRVLLIANHRTEVDWMYFWDLALRKGQIGNIKYVL 126
[Close]
BLAST of CK935014 vs. ExPASy Swiss-Prot
Match: LPAT4_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 76/125 (60.80%), Postives = 95/125 (76.00%), Query Frame = 1 
Query:  322 IAKDVKKHRPLTPIRVFRGLICLFVMLSTAFTMIIYCGFPSAIVLRLLSIHYSRKLASFFFGAWLALWPFLFEKINKTKVVFCGETVPAKERVLLIANHRTEVDWMYLWDFAWRKGCHGYIKYIL 696
            +  D  K+RPLTP+R+ RGL+ L V LSTAF  ++Y    +A+ LRLLS+  SRK+ S  FG WLALWP+LFE +N T VVF G+ +P ++RVLLIANHRTEVDWMYLW+ A RKGC GYIKY+L
Sbjct:    7 LKSDNLKNRPLTPLRILRGLMILLVFLSTAFMFLLYFAPIAALGLRLLSVQQSRKVVSLIFGLWLALWPYLFETVNGTTVVFSGDIIPVEKRVLLIANHRTEVDWMYLWNIALRKGCLGYIKYVL 131
The following BLAST results are available for this feature:
BLAST of CK935014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LPAT5_ARATH7.506e-4469.11Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
LPAT4_ARATH6.575e-4060.80Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004224_B04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935014 ID=CK935014; Name=CK935014; organism=Citrus sinensis; type=EST; length=696bp
GGGGATACAAACAGAGGTGCAGCAAGCAGCCAGCCAGCAGCACAGCACTC
ATTTTCAGACACTCAACCGCAATTATTGAAAGGGTGAATATATGGTTTCT
TGTTCATTATGGCAAGCTCTTAATTGGCTGAACAGGTCAATGTTTGGTTT
CTTAGCACTTGGACTTTCGGTACTCTAAAACAAACCCCTGTTGTTGGGAG
CATGTTCTCCTCCTGAACAATTTTGTTGTAGGAGGTATTTATCGGAGTGA
GGCGGTGCAGCTCTTTGGCGGGGAGTTTTTCTAATCAGATTTTGGTTCTT
ATGGATGTTAAAAGTGCTCTAATTGCCAAGGATGTAAAAAAGCACCGTCC
ATTGACCCCAATTAGGGTGTTCCGGGGTCTAATTTGCTTATTTGTTATGC
TTTCAACAGCATTTACGATGATAATATATTGTGGCTTTCCAAGTGCTATC
GTGTTGCGACTTTTGAGCATACATTACAGCAGGAAATTAGCATCCTTTTT
CTTTGGTGCTTGGCTAGCTTTGTGGCCTTTTCTCTTTGAAAAAATAAACA
AGACTAAAGTTGTTTTTTGTGGAGAGACTGTTCCTGCAAAGGAGCGTGTT
TTGCTTATTGCAAATCACAGAACTGAGGTAGACTGGATGTATTTGTGGGA
CTTCGCATGGCGAAAGGGATGCCATGGATATATTAAGTATATCCTT
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