CK935016

Overview
NameCK935016
Unique NameCK935016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1754 contig Csv1_Contig1754:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A6_XENTR (Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  135 AVPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            A+P +  +F  H +V PI  E   PS   M     + +AL   IY+   LFGYL F +++ S++L  +   S      +L   VRL   L ++L  P+++F  R  +  + FS+ P       R + +TLVL +     AI +PD+   F  +GST++ CL F+FPG+
Sbjct:  246 ALPTMAFSFLCHTSVLPIYCELKSPSKSKMQNVANVGIALSFLIYYISALFGYLTFYDNVKSELLQGY---SKYLPKDVLIITVRLCILLAVLLTVPLIHFPARKAVMMMFFSRYPF---SYIRHILVTLVLNIIIVLLAIYVPDMRSVFGVVGSTTSTCLLFVFPGL 407          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A5_BOVIN (Sodium-coupled neutral amino acid transporter 5 OS=Bos taurus GN=SLC38A5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 57/171 (33.33%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  126 LFTAVPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            +F  VP++  AF  H  V PI  E  +PS   M     +S+     +Y     FGYL F  S+ +++L  + Q        LL   VRL+  L + L  P++ F +R  + +LLF  K   A    R ++I L+LLV      I +P I   F  +GSTSA  L FI P +
Sbjct:  264 MFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYGLTATFGYLTFYSSVEAEMLHMYSQHD------LLILCVRLAVLLAVTLTVPVVLFPIRRALQQLLFPSK---AFSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSI 425          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A6_HUMAN (Probable sodium-coupled neutral amino acid transporter 6 OS=Homo sapiens GN=SLC38A6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 51/168 (30.36%), Postives = 82/168 (48.81%), Query Frame = 3
Query:  135 AVPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            A+P +  +F  H ++ PI  E   PS   M      ++AL   IYF   LFGYL F + + S++L  + +     +  +    V+L     ++L  P+++F  R  +  + FS  P       R   ITL L +     AI +PDI   F  +G++++ CL FIFPG+
Sbjct:  252 ALPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDKVESELLKGYSKYLSHDVVVMT---VKLCILFAVLLTVPLIHFPARKAVTMMFFSNFPF---SWIRHFLITLALNIIIVLLAIYVPDIRNVFGVVGASTSTCLIFIFPGL 413          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A7_DANRE (Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 56/199 (28.14%), Postives = 96/199 (48.24%), Query Frame = 3
Query:   57 VWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS--DMITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQK-----PLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            +W  K  +P ++P      S+ D+F A+P I   F  H +  P+     KP        V IS+ +C  +Y   G+ G+L FG S+  D+L+++  S   A++     + R    + ++  +P+L+F  RA ++ L    K       +AK+ +R +  TLV    +   A+ IPDI      +G  +A C  F+FPG+
Sbjct:  222 IWPSKDVSPGIIPV--RPASWTDVFNAMPTICFGFQCHVSSVPVFNSMKKPEIRPWWGVVTISMIICLFVYTGTGVCGFLSFGSSVSQDVLMSY-PSDDVAVA-----IARAFIIICVVTSYPILHFCGRAVLEGLWLRFKGEEVETDVAKERRRRILQTLVWFCLTLILALFIPDIGRVISLIGGLAA-CFIFVFPGL 411          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A6_RAT (Probable sodium-coupled neutral amino acid transporter 6 OS=Rattus norvegicus GN=Slc38a6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 58/197 (29.44%), Postives = 96/197 (48.73%), Query Frame = 3
Query:   48 IYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            I AV++  + T    P+L  H S   ++ A+P +  +F  H +V PI  E   PS   M      ++AL   +YF   LFGYL F + + S++L  + +      + +    V+L     ++L  P+++F  R  +  +LFS  P       R    TL L +     AI +PDI   F  +G++++ CL F+FPG+
Sbjct:  226 INAVFQISNATDDCKPKLF-HFSKESVY-AIPTMAFSFLCHTSVLPIYCELRSPSKKRMQNVTNTAIALSFLVYFVSALFGYLTFYDKVESELLQGYSKYLPHDAAVMA---VKLCILFAVLLTVPLIHFPARKALMMILFSNYPF---SWIRHSLTTLALNIIIVLLAIYVPDIRNVFGVVGASTSTCLIFVFPGL 414          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A6_DANRE (Probable sodium-coupled neutral amino acid transporter 6 OS=Danio rerio GN=slc38a6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  135 AVPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPL--LAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            AVP +  +F  H  V PI  E  +P+   M  A  +S+ L   +Y    LFGYL F   + S++L+ ++      I  +    VRL+  L ++L  P+++F  R  +  L   ++    L+     F  +TLVLL+     AI +PDI   F  +GST++ CL F++PG+
Sbjct:  244 AVPTMAFSFLCHTAVFPIYCELHRPTKRRMQRATNVSIFLSFVVYLISALFGYLTFYSHVGSELLLAYNTYLPRDILVMS---VRLAILLAVLLTVPLIHFPARKAVLMLCRGEREFSWLSHTLSCFFILTLVLLL-----AIFVPDIKNVFGVVGSTTSTCLLFVYPGM 405          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A5_MOUSE (Sodium-coupled neutral amino acid transporter 5 OS=Mus musculus GN=Slc38a5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 54/167 (32.34%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  138 VPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            VP++  AF  H  V PI  E  +P+   M     +S+     +Y     FGYL F  ++ +++L  + Q        +L   VRL+  L + L  P++ F +R  + +LLF  K   A    R ++I L+LL+      I +P I   F F+GSTSA  L FI P V
Sbjct:  269 VPIMAFAFVCHPEVLPIYTELCRPTQRRMQAVANMSIGAMFIMYGLTATFGYLTFYSTVKAEMLEMYTQED------MLILCVRLAVLLAVTLTVPVVLFPIRRALQQLLFPSK---AFSWLRHVAIALILLILVNILVICVPTIRDIFGFIGSTSAPSLIFILPSV 426          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A5_HUMAN (Sodium-coupled neutral amino acid transporter 5 OS=Homo sapiens GN=SLC38A5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 3
Query:  138 VPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            VP++  AF  H  V PI  E  +PS   M     +S+     +Y     FGYL F  S+ +++L  + Q     +       VRL+  L + L  P++ F +R  + +LLF  K   A    R ++I L+LLV      I +P I   F  +GSTSA  L FI P +
Sbjct:  262 VPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYGLTATFGYLTFYSSVKAEMLHMYSQKDPLILC------VRLAVLLAVTLTVPVVLFPIRRALQQLLFPGK---AFSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSI 419          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A5_RAT (Sodium-coupled neutral amino acid transporter 5 OS=Rattus norvegicus GN=Slc38a5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 55/167 (32.93%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  138 VPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFPGV 632
            VP++  AF  H  V PI  E   P+   M     +S+     +Y     FGYL F  ++ +++L  + Q        LL   VRL+  L + L  P++ F +R  + +LLF  K   A    R ++I L+LL+      I +P I   F F+GSTSA  L FI P V
Sbjct:  269 VPIMAFAFVCHPEVLPIYTELCCPTQRRMQAVANMSIGAMFIMYGLTATFGYLTFYSTVKAEMLEMYTQED------LLILCVRLAVLLAVTLTVPVVLFPIRRALQQLLFPSK---AFSWPRHVAIALILLILVNILVICVPTIRDIFGFIGSTSAPSLIFILPSV 426          
BLAST of CK935016 vs. ExPASy Swiss-Prot
Match: S38A2_CHICK (Sodium-coupled neutral amino acid transporter 2 OS=Gallus gallus GN=SLC38A2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  135 AVPVIVTAFTFHFNVHPIGFEFDKPSD--MITAVRISLALCAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIXXFFQFLGSTSAVCLAFIFP 626
            AVP++  +F  H  + PI  E    S   M+    +S      +Y    LFGYL F   + S++L  +    G+ I  L+   VRL+  + + L  P++ F +R+++ +LL++ K        R  SIT+VLL F+    I +P I   F F+G+++A  L FI P
Sbjct:  290 AVPILTFSFVCHPAILPIYEELKSRSRKRMMNVSYVSFFAMFLMYLLAALFGYLTFYGRVESELLHTYSAFLGADILLLI---VRLAVLMAVTLTVPVVIFPIRSSVTQLLWAGKEF---SWWRHCSITVVLLAFTNVLVIFVPTIRDIFGFIGASAAAMLIFILP 449          
The following BLAST results are available for this feature:
BLAST of CK935016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
S38A6_XENTR1.920e-1632.74Probable sodium-coupled neutral amino acid transpo... [more]
S38A5_BOVIN1.376e-1433.33Sodium-coupled neutral amino acid transporter 5 OS... [more]
S38A6_HUMAN1.797e-1430.36Probable sodium-coupled neutral amino acid transpo... [more]
S38A7_DANRE3.066e-1428.14Putative sodium-coupled neutral amino acid transpo... [more]
S38A6_RAT8.920e-1429.44Probable sodium-coupled neutral amino acid transpo... [more]
S38A6_DANRE8.920e-1431.76Probable sodium-coupled neutral amino acid transpo... [more]
S38A5_MOUSE1.987e-1332.34Sodium-coupled neutral amino acid transporter 5 OS... [more]
S38A5_HUMAN1.987e-1332.34Sodium-coupled neutral amino acid transporter 5 OS... [more]
S38A5_RAT3.390e-1332.93Sodium-coupled neutral amino acid transporter 5 OS... [more]
S38A2_CHICK4.427e-1331.33Sodium-coupled neutral amino acid transporter 2 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004222_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935016 ID=CK935016; Name=CK935016; organism=Citrus sinensis; type=EST; length=640bp
CTGTGCTGCTTGCTGTGATATTTGTTGCTATATGCTNNNTTATGGCAATA
TATGCTGTCTGGGAGGGCAAATCGAAAACCCCAAAACTACTACCGCAGTT
GGACAACCATGTGTCATTTTTCGATCTTTTCACTGCTGTCCCAGTTATTG
TTACAGCTTTCACTTTTCATTTTAATGTTCATCCGATAGGTTTTGAGTTT
GACAAGCCTTCTGACATGATCACAGCAGTAAGAATTTCATTAGCACTATG
TGCCGCCATCTACTTTTCCGTAGGCCTGTTTGGGTACCTTCTGTTTGGGG
AGTCAATCATGTCTGACATCCTCATAAATTTCGATCAGAGTTCTGGTTCA
GCAATTAGCTCATTACTCAATGACCTTGTTCGGTTAAGCTATGCACTTCA
CCTCATGCTCGTGTTCCCTATGTTGAACTTTTCTCTGAGGGCTAACATCG
ATGAGCTGCTTTTCTCCCAGAAACCTCTTCTGGCAAAAGACACCAAAAGA
TTTTTGTCCATCACCCTTGTGCTTCTAGTATTCTCTTATACAGCAGCCAT
AACGATCCCGGACATATGNNNCTTCTTTCAGTTCCTAGGATCGACTTCTG
CTGTCTGTCTCGCTTTCATTTTCCCAGGTGTCATTGTTCT
back to top