CK935017

Overview
NameCK935017
Unique NameCK935017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1755 contig Csv1_Contig1755:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935017 vs. ExPASy Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 8.391e-82
Identity = 156/241 (64.73%), Postives = 187/241 (77.59%), Query Frame = 2
Query:   44 MATISVPLSHNTSSRQHLSTIRHRFHFPRSSHSPLTIACSA---RRNSSESKEGFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYVDLQKLCTNTTLSPDGRDELGCR 757
            MA++ V  + N  S    S      +  R   S +T+ CSA   R N    K+    LKEL  +AC  L A  +T ASPVIAANQRLPPLSTEPDRCE+AFVGNTIGQANGVYDKP+DLRFCDYTN+++NLKGK+L+AALM  AKFDGADM+EVVMSKAYAV ASFKGV+F+NAV+DRVNFGK++L+GAVF+NTVLSGSTF EA L+D VFEDTIIGY+DLQK+C N +++ +GR  LGCR
Sbjct:    1 MASLPVQFTRNQISSPFFSV-----NLRREPRSLVTVHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEGRLVLGCR 236          
BLAST of CK935017 vs. ExPASy Swiss-Prot
Match: TL225_ARATH (Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13
Identity = 69/245 (28.16%), Postives = 110/245 (44.90%), Query Frame = 2
Query:   59 VPLSHNTSSRQHLSTIRHRFHFPR--------SSHSPLTIACSARRNSSESKEGFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYVDLQKLC-----TNTTLSPDGRDELGC 754
            +P+     SR   S  R  +HF R        SS S L I     ++SS ++EG     E       +    +   A+ VIA++  +P ++ E +R E    G   G  +       DL    ++NE  N +  +  +A M ++ F G+  +   + KA A  A+F G D S+ ++DR+   +A+L  AV   +VL+ S    A+++ A F D +I  +  Q LC     TN     D R  LGC
Sbjct:    9 LPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSRSNLEI-----KDSSNTREGCCSSAESNT----WKRILSAAMAAAVIASSSGVPAMA-ELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNE--NFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240          
The following BLAST results are available for this feature:
BLAST of CK935017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TL17_ARATH8.391e-8264.73Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
TL225_ARATH6.339e-1328.16Thylakoid lumenal protein At1g12250, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004222_H12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935017 ID=CK935017; Name=CK935017; organism=Citrus sinensis; type=EST; length=782bp
GGGGGATAGACACTGAAACAGAGTCGCCCACACAACACAACAGATGGCTA
CCATTTCAGTTCCACTCTCTCATAACACTTCATCTCGTCAACATTTATCC
ACTATACGCCACCGTTTTCACTTTCCCAGATCGTCCCATTCACCCCTCAC
AATCGCTTGCTCTGCTAGAAGAAATTCCTCAGAATCAAAGGAAGGCTTTT
CTCATTTAAAGGAACTCAAGGGCGTGGCTTGTGGCTTTCTTGCTGCTTGG
GCTGTAACTGCTGCCTCACCCGTCATTGCTGCTAATCAGAGGCTGCCCCC
GCTTTCAACAGAGCCTGATCGATGTGAGCGTGCATTTGTTGGTAACACGA
TTGGTCAAGCAAATGGCGTTTATGACAAGCCAATTGATCTGCGCTTCTGT
GATTACACTAATGAAAAATCCAACCTCAAGGGGAAGTCTCTTGCGGCAGC
ACTCATGTCCGATGCAAAGTTTGATGGTGCGGACATGTCAGAAGTGGTTA
TGTCAAAGGCTTACGCTGTGGGAGCAAGCTTCAAGGGTGTAGACTTCTCG
AATGCTGTTTTAGACCGGGTAAATTTTGGGAAAGCACATCTTGAAGGAGC
TGTTTTCAAGAATACTGTATTATCTGGCTCCACTTTTAATGAAGCTCAAC
TACAAGATGCAGTTTTTGAGGACACAATTATAGGCTACGTTGATCTCCAG
AAGCTGTGTACAAATACAACTCTCAGTCCTGATGGAAGAGATGAATTGGG
TTGTCGATGAAACCATGCCCACCTTGTTGTTA
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