CK935037

Overview
NameCK935037
Unique NameCK935037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_CHICK (RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.210e-21
Identity = 68/200 (34.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  203 SNESSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTIL----RKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 790
            ++  S +F R  + DL V++ P  N + +  L+  I+P+LQ  +  +QKKAY+VL  +       C  F+ S LEEL  ++++ L S    AKR RL CL+    H+ K  S +   ++ ++ + E+IL  KE +   R  A+ +LV++G AF        +E + +F  +V  GL G S  MIS  V  L RL +EF D
Sbjct:  744 TSPESSEFARLSILDLVVAMSPYANEQALGSLYRTIQPSLQSKDHSMQKKAYRVLEEVCAAPHAPCQAFVHSHLEELQAVLLDSLKSAASPAKRPRLKCLF----HIMKQLSAEHEPFV-TALVPEVILCTKEVSVGARKNAFMLLVEMGHAF-IRFGPTPQEAMERFLLLVYAGLTG-SVTMISCTVLALTRLFFEFRD 936          
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_HUMAN (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.419e-18
Identity = 71/252 (28.17%), Postives = 118/252 (46.83%), Query Frame = 2
Query:   56 TIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG----FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQ-FFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLV 796
            TI  + +I D ++V  L ++   ++L+                         +S DF R  + DL V+L P  +   I  L+  I+P L+     +QKKAY+VL  +     G    F+ S LE+L   +++ L S    AKR RL CL  I+  +S +  E      +++ + E+IL  KE +   R  A+ +LV++G AF     G  +E   Q +  ++  GL G +  M+S ++  L  L +EF  L+
Sbjct:  716 TIRTYLTITDTQLVNSLLEKASEKVLDP------------------------ASSDFTRLSVLDLVVALAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGALFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKE-----FITALIPEVILCTKEVSVGARKNAFALLVEMGHAF--LRFGSNQEEALQCYLVLIYPGLVG-AVTMVSCSILALTHLLFEFKGLM 935          
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_MOUSE (RRP12-like protein OS=Mus musculus GN=Rrp12 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 61/200 (30.50%), Postives = 103/200 (51.50%), Query Frame = 2
Query:  212 SSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG----FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKEN-LYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLV 796
            +S DF R  + DL V+L P  +   I  L+  I+P L+     +QKKAY+VL  +     G    F+ S L++L   +++ L +    AKR RL CL  I+  +S +  E      +++ + E+IL  KE +   R  A+ +LV++G AF     G  +E+ L ++  ++  GL G +   +S ++  L  L +EF  L+
Sbjct:  745 ASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYLESKVHGVQKKAYRVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLRTTSSPAKRPRLKCLIHIVKTLSAEHEE-----FIAALIPEVILCTKEVSVGARKSAFTLLVEMGHAF--LRFGSNQEDALQRYLVLIYPGLLG-AVTTVSCSILALTHLLFEFKGLM 936          
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_YEAST (Ribosomal RNA-processing protein 12 OS=Saccharomyces cerevisiae GN=RRP12 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 66/280 (23.57%), Postives = 125/280 (44.64%), Query Frame = 2
Query:   11 IFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSN---ESSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTI--LRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGK---------------ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 790
            ++ ++  +    +  TI  +  I  KE + + F      L                NSM  + S N   E     + A L DL + ++  L       LF      +   + LIQK+AY++++ +  L+     ++  + ++  +M++   S   SAK  RL  +  I+  +  D  +      +   + E+IL+ K+ N+++R  A+D L+ +GR   +E NG  K                ++ +FF +++ GL GES HM+S+++ G A L +EF +
Sbjct:  659 VYTQTTPNARSYILETIDQYLKITSKEDLEKTFNNVCGLL---------------KNSMNEESSGNVNKEKKKPQLTATLLDLIICMITYLPVSSYSALFSMFSLTVNSADALIQKRAYRIITKLSELKSGSTAVAQFISDIENVMVDSASSVQTSAKAARLTAIKTIVELLPLDHLD-----FIVRTVAEVILSTKDVNEKSRETAFDTLICMGRKM-NEPNGIIKLFQIPGYDPTTPDQSSSISEFFKIISAGLIGESQHMVSSSITGYACLVFEFKN 917          
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_SCHPO (Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces pombe GN=SPAPB8E5.07c PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 60/203 (29.56%), Postives = 98/203 (48.28%), Query Frame = 2
Query:  212 SSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG--FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGR-AFGDEENGGGK-ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY 808
            SSP  M   L DL + + P LN      LF  +   L+     IQKK YK+L T+LR   G  + +  ++E+   +  V      S ++ RL  L  +    S +         +   L E I++LKE N++ R+ A+ +L  I + A    E G  K E + +F ++++ GLAG S HMISA +  ++ +  E+   +S  +
Sbjct:  668 SSP--MAYSLIDLLIVISPYLNQDYAVTLFEYVHEFLRHVNPAIQKKGYKLLGTLLRVDYGKAYATQHVKEIFEELSSVADRVVSSTRKDRLASLNALYELQSSE-----LVIAIPQLLPEAIISLKEVNEKARHTAFQLLFNIAKSAVNSVEFGNSKPERVEKFVSVISAGLAGSSTHMISATIIAISSIVMEYKVFISEPF 863          
The following BLAST results are available for this feature:
BLAST of CK935037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RRP12_CHICK5.210e-2134.00RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 ... [more]
RRP12_HUMAN1.419e-1828.17RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 S... [more]
RRP12_MOUSE1.017e-1630.50RRP12-like protein OS=Mus musculus GN=Rrp12 PE=1 S... [more]
RRP12_YEAST2.265e-1623.57Ribosomal RNA-processing protein 12 OS=Saccharomyc... [more]
RRP12_SCHPO1.795e-1329.56Putative ribosomal RNA-processing protein 12 OS=Sc... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004222_G05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935037 ID=CK935037; Name=CK935037; organism=Citrus sinensis; type=EST; length=816bp
GGGGTCTCGAATTTTTCTTGAGTCTGCTAAAGATGAGGGAGGTTGTTTGC
AGTCAACTATTGGCGACTTTGCTTCAATAGCTGATAAAGAAATAGTTACA
AGGTTATTCAAAAGGACTATGCATCGGCTTTTGGAGGCCACCCAAGAGGC
TGGAAAAACAAAAAGTACTAGAAAATCTAATTCTATGCAGATTGATGATT
CATCAAATGAAAGCTCGCCTGATTTTATGAGGGCTCGATTGTTTGACCTA
GCAGTTTCACTTTTGCCGGGTTTGAATGCTAAAGAGATTGATGTCTTATT
TGTTGCAATAAAACCTGCATTACAGGATGATGAAGGGTTGATACAAAAGA
AAGCATACAAAGTTCTTTCAACTATTCTCAGGAAATGTGATGGATTTCTT
TCATCAAGGCTTGAGGAGTTGCTTGGTCTTATGATTGAAGTGTTGCCTTC
TTGCCATTTTTCTGCCAAGCGCCACAGACTTGATTGTTTGTACTTTATAA
TAGCTCATGTATCCAAGGATGATTCTGAGCAAAGGAGAAGCTACATTCTT
AGTTCTTTTCTGACAGAGATAATACTTGCTCTGAAAGAGGCCAATAAAAG
AACAAGAAATAGAGCTTATGATGTTCTTGTCCAAATTGGTCGTGCTTTTG
GGGATGAAGAGAATGGCGGAGGGAAAGAAAACTTGTATCAATTTTTTAAC
ATGGTGGCTGGAGGCTTGGCTGGAGAATCTCCTCATATGATTAGTGCTGC
AGTGAAGGGCTTAGCTCGTTTAGCTTATGAGTTTTCTGATCTCGTTTCTA
ATGTGTACAAGTTGCT
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