CK935037
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_CHICK (RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.210e-21 Identity = 68/200 (34.00%), Postives = 107/200 (53.50%), Query Frame = 2 Query: 203 SNESSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTIL----RKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 790 ++ S +F R + DL V++ P N + + L+ I+P+LQ + +QKKAY+VL + C F+ S LEEL ++++ L S AKR RL CL+ H+ K S + ++ ++ + E+IL KE + R A+ +LV++G AF +E + +F +V GL G S MIS V L RL +EF D Sbjct: 744 TSPESSEFARLSILDLVVAMSPYANEQALGSLYRTIQPSLQSKDHSMQKKAYRVLEEVCAAPHAPCQAFVHSHLEELQAVLLDSLKSAASPAKRPRLKCLF----HIMKQLSAEHEPFV-TALVPEVILCTKEVSVGARKNAFMLLVEMGHAF-IRFGPTPQEAMERFLLLVYAGLTG-SVTMISCTVLALTRLFFEFRD 936
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_HUMAN (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.419e-18 Identity = 71/252 (28.17%), Postives = 118/252 (46.83%), Query Frame = 2 Query: 56 TIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG----FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQ-FFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLV 796 TI + +I D ++V L ++ ++L+ +S DF R + DL V+L P + I L+ I+P L+ +QKKAY+VL + G F+ S LE+L +++ L S AKR RL CL I+ +S + E +++ + E+IL KE + R A+ +LV++G AF G +E Q + ++ GL G + M+S ++ L L +EF L+ Sbjct: 716 TIRTYLTITDTQLVNSLLEKASEKVLDP------------------------ASSDFTRLSVLDLVVALAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGALFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKE-----FITALIPEVILCTKEVSVGARKNAFALLVEMGHAF--LRFGSNQEEALQCYLVLIYPGLVG-AVTMVSCSILALTHLLFEFKGLM 935
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_MOUSE (RRP12-like protein OS=Mus musculus GN=Rrp12 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16 Identity = 61/200 (30.50%), Postives = 103/200 (51.50%), Query Frame = 2 Query: 212 SSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG----FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKEN-LYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLV 796 +S DF R + DL V+L P + I L+ I+P L+ +QKKAY+VL + G F+ S L++L +++ L + AKR RL CL I+ +S + E +++ + E+IL KE + R A+ +LV++G AF G +E+ L ++ ++ GL G + +S ++ L L +EF L+ Sbjct: 745 ASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYLESKVHGVQKKAYRVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLRTTSSPAKRPRLKCLIHIVKTLSAEHEE-----FIAALIPEVILCTKEVSVGARKSAFTLLVEMGHAF--LRFGSNQEDALQRYLVLIYPGLLG-AVTTVSCSILALTHLLFEFKGLM 936
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_YEAST (Ribosomal RNA-processing protein 12 OS=Saccharomyces cerevisiae GN=RRP12 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16 Identity = 66/280 (23.57%), Postives = 125/280 (44.64%), Query Frame = 2 Query: 11 IFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSN---ESSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTI--LRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGK---------------ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 790 ++ ++ + + TI + I KE + + F L NSM + S N E + A L DL + ++ L LF + + LIQK+AY++++ + L+ ++ + ++ +M++ S SAK RL + I+ + D + + + E+IL+ K+ N+++R A+D L+ +GR +E NG K ++ +FF +++ GL GES HM+S+++ G A L +EF + Sbjct: 659 VYTQTTPNARSYILETIDQYLKITSKEDLEKTFNNVCGLL---------------KNSMNEESSGNVNKEKKKPQLTATLLDLIICMITYLPVSSYSALFSMFSLTVNSADALIQKRAYRIITKLSELKSGSTAVAQFISDIENVMVDSASSVQTSAKAARLTAIKTIVELLPLDHLD-----FIVRTVAEVILSTKDVNEKSRETAFDTLICMGRKM-NEPNGIIKLFQIPGYDPTTPDQSSSISEFFKIISAGLIGESQHMVSSSITGYACLVFEFKN 917
BLAST of CK935037 vs. ExPASy Swiss-Prot
Match: RRP12_SCHPO (Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces pombe GN=SPAPB8E5.07c PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13 Identity = 60/203 (29.56%), Postives = 98/203 (48.28%), Query Frame = 2 Query: 212 SSPDFMRARLFDLAVSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG--FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGR-AFGDEENGGGK-ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY 808 SSP M L DL + + P LN LF + L+ IQKK YK+L T+LR G + + ++E+ + V S ++ RL L + S + + L E I++LKE N++ R+ A+ +L I + A E G K E + +F ++++ GLAG S HMISA + ++ + E+ +S + Sbjct: 668 SSP--MAYSLIDLLIVISPYLNQDYAVTLFEYVHEFLRHVNPAIQKKGYKLLGTLLRVDYGKAYATQHVKEIFEELSSVADRVVSSTRKDRLASLNALYELQSSE-----LVIAIPQLLPEAIISLKEVNEKARHTAFQLLFNIAKSAVNSVEFGNSKPERVEKFVSVISAGLAGSSTHMISATIIAISSIVMEYKVFISEPF 863 The following BLAST results are available for this feature:
BLAST of CK935037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935037 ID=CK935037; Name=CK935037; organism=Citrus sinensis; type=EST; length=816bpback to top |