CK935049

Overview
NameCK935049
Unique NameCK935049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935049_ssr541 microsatellite CK935049_ssr541:541..552. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1759 contig Csv1_Contig1759:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935049 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.601e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  115 MATEDPVVDTETLPQPESAEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 381
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of CK935049 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.245e-11
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  115 MATEDPVVDTETLPQPESAEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 381
            MATE+PV+  E + + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEE-QAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of CK935049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA6.601e-1349.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC1.245e-1146.07Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004222_F08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935049 ID=CK935049; Name=CK935049; organism=Citrus sinensis; type=EST; length=798bp
GGGGCACAAACGAAATTACTAGTCCTCCACCACCCGCATTTTTAGATCCA
ATCTTTCGTTATCTTTCTTGCTCGCTCTCCACTTCCTAATTTCTGAAACC
CAATTCGATTCAAAATGGCCACTGAAGATCCCGTTGTGGACACGGAGACC
CTTCCTCAACCGGAATCCGCTGAACCGGTGGTAGAGGACAAACCGTCCTC
CAAAGCCGGCAAAGGCAAGACCTCTAAGGAGCCCAAAGCCAAGAAAGCCG
CTGCTCCGAGGAAGCCTAGAAGCCCTCCCTCTCATCCTCCGTATGAAGAG
ATGATTAAGGATGCAATTGTTACTTTGAAAGAGAAGACCGGTTCGAGTCA
GTATGCAATTGCCAAATTTATTGAGGAGAAGCACAAGCAGTTGCCACCCA
ACTTTAAGAAGCTGTTGCTGTTTCATTTGAAGAAGCTTGTGGGTTCCGGA
AAGCTCGTGAAGGTTAAGGGTTCCTTCAAGCTTCCATCGGTTAGGGCTGC
CGTTTCTAAGCCGGCTGCATCTGTTCCTGCTTCTCCGGCTAAGAAGAAGA
AGCCGGTTGCTGCTGGTAAGGCCAAAACTAAGGCGGCGCCCTCCAAGGCC
AAAGCTCCACCTAAGGCTAAGGCTAAGGCACCAGCTAAAGCTCCGGCCAA
GGCTAAGCCAGCTGCTAAACCCAAAGCCAAGCCGGCTGCCAAGACTAAGG
CGGTGGCTGCCAAGACTAAAGCGGCTCCGGCTAAGGCTAAGCCTGCTGCC
AAACCGAAAGCTGCAACAACCAAGACGAAGGTGACCTGCCAAGCCGAA
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