CK935108

Overview
NameCK935108
Unique NameCK935108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.810e-41
Identity = 78/109 (71.56%), Postives = 92/109 (84.40%), Query Frame = 1
Query:   88 EEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            EEGQVI CHTVE+WNEQ QKG   K LIVVDFTASWC PC+ ++P L+ELAKKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:    4 EEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.613e-40
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 1
Query:   82 MVEEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            M EEGQVI  HTV++WNE  QKGI  KKLIVVDFTASWC PCK ++   +ELAKK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.613e-40
Identity = 73/109 (66.97%), Postives = 92/109 (84.40%), Query Frame = 1
Query:   88 EEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            EEGQVI+CHTVE+WNEQ QK   +K L+VVDFTASWC PC+ ++P  ++LAKKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L+++VGAKKDELQ  + KH
Sbjct:    4 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.889e-39
Identity = 72/109 (66.06%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   88 EEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++AKK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK ++R+VGAKK+ELQ  + KH
Sbjct:   10 EEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKH 118          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.306e-35
Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = 1
Query:   82 MVEEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            M EE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SELAKK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ +ERIVGA+KDEL   +  H
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.256e-34
Identity = 63/111 (56.76%), Postives = 88/111 (79.28%), Query Frame = 1
Query:   82 MVEEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            M  EG+VI+CHT+E WNE+ +    +KKLIV+DFTASWCPPC+ ++P+ +E+AKK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG +++R+VGA KDE+   + KH
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 6.893e-33
Identity = 65/110 (59.09%), Postives = 86/110 (78.18%), Query Frame = 1
Query:   85 VEEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            V  G+VIS H++E W  Q ++  AAKKL+V+DFTASWC PC++M+PI ++LAKK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V +R+VGA K+EL   V  H
Sbjct:   15 VGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLH 124          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.002e-33
Identity = 62/111 (55.86%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   82 MVEEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            M  EG+VI+CHTVE W E+ +    +KKLIV+DFTA+WCPPC+ ++P+ ++LAKK   V+F KVDVDEL +VAEE+ V+AMPTF+  KEG++ E +VGA K+E+   +EKH
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 64/110 (58.18%), Postives = 86/110 (78.18%), Query Frame = 1
Query:   88 EEGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 414
            EEGQVI CHT + W  Q  K   + KLIV+DFTASWCPPC++++PI ++LAKK + + IF KVDVDEL+SVA+E+ VEAMPTFV  K G+V++++VGA K++LQ  + KH
Sbjct:    4 EEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
BLAST of CK935108 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.835e-32
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   91 EGQVISCHTVESWNEQPQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 405
            EG V +CH+ E W  + Q+ I  K+L+ VDFTA+WC PC+++ P+  EL+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKKD+L+  V
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
The following BLAST results are available for this feature:
BLAST of CK935108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TRXH_RICCO1.810e-4171.56Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC2.613e-4069.37Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH2.613e-4066.97Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC2.889e-3966.06Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES3.306e-3563.06Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH1.256e-3456.76Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.893e-3359.09Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH3_ARATH9.002e-3355.86Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH3.421e-3258.18Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA5.835e-3254.29Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004177_G11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935108 ID=CK935108; Name=CK935108; organism=Citrus sinensis; type=EST; length=573bp
CTTACGGGCGGNNNCCAAACACAGACCNNNATATNNAGAAATCAGAACAG
AGAAGTAATTTAACTTGTGATCATAATTAAGATGGTCGAGGAGGGACAAG
TGATCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCCCCAAAAGGGC
ATTGCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCC
GCCATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGC
CCGCTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCT
GAGGAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGG
CAAAGTCCTGGAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGG
CCGTCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCT
TGATTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGT
TTGTGGTTGCTTAATGTAAGAATATGGTACCATGTTTAACAGGCCTGTAT
ATACGAATAAATGACAATCTTCT
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