CK935119

Overview
NameCK935119
Unique NameCK935119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935119 vs. ExPASy Swiss-Prot
Match: FBL10_ARATH (F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.376e-61
Identity = 117/207 (56.52%), Postives = 158/207 (76.33%), Query Frame = 1
Query:  115 KSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIRPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQI 735
            +SLD LPAALL TI+TKLDVAS+ S+A+TC T ++C  ++L+F  +FH+ +++LS E +RPLL PN  L SLK+DCG+L +SAI++++RP+L E+ LHNC DFSG L+SEIG KCKDLR L LGSVAEK GRSI    LE+LLNGC  LE L LMFD+SL+LR    R++ L S++LT LE+G+I+S M+T+LL+      Q  N++
Sbjct:   21 RSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHIFNVSLSMETVRPLLFPNQQLSSLKLDCGRLGNSAIDILVRPSLREISLHNCRDFSGDLISEIGRKCKDLRLLCLGSVAEKVGRSISRCALEDLLNGCSHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNRV 227          
BLAST of CK935119 vs. ExPASy Swiss-Prot
Match: ATB_ARATH (F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  154 IITKLDVASISSVAATCSTFR-ACAAQILSFLTSFHLLDIALSTEIIRPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALIL 576
            I+ +LD+ ++ SVA   +T R A  + +L  LTS  L   +   E +  +L     L SL ++C +L+ +++  +L P L EL L  C+  S  +L+ IG  C +LR L L  +A+     +  S+L ++LNGCP LE+L L
Sbjct:   13 ILKRLDLENLCSVACVSTTLRSAVVSGVLPSLTSLDLSVFSPDDETLNHVLRGCIGLSSLTLNCLRLNAASVRGVLGPHLRELHLLRCSLLSSTVLTYIGTLCPNLRVLTL-EMADLDSPDVFQSNLTQMLNGCPYLESLQL 153          
The following BLAST results are available for this feature:
BLAST of CK935119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBL10_ARATH3.376e-6156.52F-box/LRR-repeat protein 10 OS=Arabidopsis thalian... [more]
ATB_ARATH2.453e-1134.51F-box protein At-B OS=Arabidopsis thaliana GN=ATB ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004177_E12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935119 ID=CK935119; Name=CK935119; organism=Citrus sinensis; type=EST; length=742bp
GGGGGAACCCGATAACAAATCTCTCCTTTAAAACAACACTCAATCAAATN
NNNNACAGATCGAGTCTGCGAGAGAAGAAAGCAAAGGCAAATGGCCGCTG
CCGAAACCAGCGGCAAGAGCCTGGATCAGCTGCCTGCGGCTCTCTTGTGT
ACCATAATCACAAAGCTTGACGTGGCTTCGATCTCCTCCGTTGCTGCTAC
TTGCAGTACTTTCAGGGCCTGTGCCGCTCAGATCCTCTCTTTTCTGACCA
GTTTCCATCTTCTTGATATTGCTCTGTCGACCGAAATTATCAGGCCTTTG
TTACCACCAAATCCATATCTTAGGAGCTTAAAGGTTGATTGTGGTAAGCT
TGATGATTCAGCCATTGAGCTTATGCTTCGGCCTACATTGCACGAGCTTT
GTCTGCATAATTGTGCAGATTTTAGTGGGAAGTTGCTTTCTGAGATCGGA
GGGAAATGCAAGGATCTAAGGTCCCTGTACTTGGGTTCTGTTGCTGAAAA
GAGGGGACGGTCTATTCATATCTCTGATTTGGAGGAGTTGCTCAATGGTT
GTCCTCAATTAGAAGCATTGATCCTAATGTTTGACATCTCACTCTTTCTT
CGTCATAACTTTGCTCGAGTTTGGGCTTTAGCTTCAGAAAAGCTAACTTC
TCTTGAGATCGGCTACATATCTTCTGTTATGGTGACCGAATTGCTTAGCC
CAAATGTTGAACCCCATCAATCACCGAACCAAATTCGACCAT
back to top