CK935143

Overview
NameCK935143
Unique NameCK935143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11902 contig Csv1_Contig11902:733..1593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935143 vs. ExPASy Swiss-Prot
Match: LIN1_DROME (LIN1-like protein OS=Drosophila melanogaster GN=CG5198 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 2
Query:  296 NGNDISAAEVTYEGDENFVDDGIQIDPFNLDKEREEGYFDAQGNFVEYVNENEIKDAWLDSLEVDQRYVGTAVIDNKVIEAQEDKDNDHELSSEELG------VIKRRIANILEPGETVTQALRR----------LKGTSNKKAKMSAETKRVFDQLTEDAMRLMEENGEYNVYHENRETFEREAEGYERLXXSKXK-ADAYDMF 859
            N +DI   E   EG    V+D +++ PFN+ +E EEG+FD  G++  +  E E KD WLD+++    +V      N    A++++++  E  +E +G      +   ++   ++PGETV   L+R          L+    KKA +     +   QLTE A  ++ + G  ++Y +  E+   +A+  +    SK K AD  DM+
Sbjct:   39 NDSDIEGGE---EGVAK-VEDDVKVTPFNMKEELEEGHFDKDGHY-HWNKETEAKDNWLDNID----WVKIGTQKNAFDPAKDEENSSDEEKNEPVGKAFNLSMNLMKMVEFMKPGETVKMTLQRLGKQRPVLTTLQRIKQKKAGIVDPKTQEISQLTELANEILSKTGNMDIYQDTYESI--KAKIADLPGTSKPKVADDIDMY 232          
BLAST of CK935143 vs. ExPASy Swiss-Prot
Match: CD2B2_MOUSE (CD2 antigen cytoplasmic tail-binding protein 2 OS=Mus musculus GN=Cd2bp2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 74/259 (28.57%), Postives = 115/259 (44.40%), Query Frame = 2
Query:   89 DEDSDEQPMQKRVRFPKGKKVKP------------GKEAVDGVKDDGDGPTGLKNPQLAAKERATHRNLMTFELCSEESRGNGNDISAAEVTYEGDENFVDDGIQIDPFNLDKEREEGYFDAQGNFVEYVNEN-EIKDAWLDSLEVDQRYVGTAVIDNKVIEAQEDKDNDHELSSEELGVIKRRIANILEPGETVTQALRRL------KGTSNKKAKMSAETKRVFDQLTEDAMRLMEENGEYNVYHENRETFEREAEG 808
            DED +++     +  PK K V P            GK ++D  ++D D     K   LA                SE+  G      AA +  EG       G++I PFNL +E EEG+FDA GN+  ++N++ +I+D+WLD+  +D   +     D   +   E++D+  +       +++  +  +L P ETV  ALRRL      KG SN K      + +  D+L+  A + M   G   VY E RE      +G
Sbjct:   13 DEDGEDE-----ISVPKKKLVDPVAAAGGPGSRFKGKHSLDSDEEDDDEEGSSKYDILA----------------SEDVEGQ----EAATLPSEG-------GVRITPFNLQEEMEEGHFDADGNY--FLNQDAQIRDSWLDN--IDWVRIKERPPDKHQVSDSEEEDSLGQTPMSAQALLE-GLLELLLPRETVAGALRRLGARGGGKG-SNSKGTGRPNSPQRLDRLSGLADQ-MVARGNLGVYQETRERLAMRLKG 232          
BLAST of CK935143 vs. ExPASy Swiss-Prot
Match: CD2B2_HUMAN (CD2 antigen cytoplasmic tail-binding protein 2 OS=Homo sapiens GN=CD2BP2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 73/260 (28.08%), Postives = 113/260 (43.46%), Query Frame = 2
Query:   86 DDEDSDEQPMQKRVRFPKGKKVKP------------GKEAVDGVKDDGDGPTGLKNPQLAAKERATHRNLMTFELCSEESRGNGNDISAAEVTYEGDENFVDDGIQIDPFNLDKEREEGYFDAQGNFVEYVNEN-EIKDAWLDSLE---VDQRYVGTAVIDNKVIEAQEDKDNDHELSSEELGVIKRRIANILEPGETVTQALRRL---KGTSNKKAKMSAETKRVFDQLTEDAMRLMEENGEYNVYHENRETFEREAEG 808
            D+ED DE      +  PK K V P            GK ++D  +++ D   G     +               L SE+  G      AA +  EG       G++I PFNL +E EEG+FDA GN+  ++N + +I+D+WLD+++   + +R  G     +     +ED      +S++ L      +  +L P ETV  ALRRL    G   +K      + +  D+L+  A + M   G   VY E RE      +G
Sbjct:   13 DEEDEDE------IIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDI---------------LASEDVEGQ----EAATLPSEG-------GVRITPFNLQEEMEEGHFDADGNY--FLNRDAQIRDSWLDNIDWVKIRERPPGQRQASD---SEEEDSLGQTSMSAQAL---LEGLLELLLPRETVAGALRRLGARGGGKGRKGPGQPSSPQRLDRLSGLADQ-MVARGNLGVYQETRERLAMRLKG 231          
The following BLAST results are available for this feature:
BLAST of CK935143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LIN1_DROME3.673e-1228.29LIN1-like protein OS=Drosophila melanogaster GN=CG... [more]
CD2B2_MOUSE1.823e-1128.57CD2 antigen cytoplasmic tail-binding protein 2 OS=... [more]
CD2B2_HUMAN1.823e-1128.08CD2 antigen cytoplasmic tail-binding protein 2 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_E02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935143 ID=CK935143; Name=CK935143; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTTCTCTTTGAGTTATTATTAGATTTTTTTTTTGGTCTCAAAA
TGGAGCAAAAATCTTCTCGCAAGCGCCACTTTTTAGACGACGAAGATTCG
GACGAACAACCCATGCAGAAAAGAGTTAGATTTCCCAAGGGTAAGAAGGT
GAAGCCCGGGAAAGAGGCCGTGGATGGAGTCAAGGATGATGGTGATGGTC
CAACTGGTTTGAAGAATCCCCAACTTGCTGCTAAGGAGCGTGCAACTCAC
CGGAACCTAATGACTTTCGAGCTTTGCAGTGAAGAAAGTAGAGGGAATGG
TAATGATATCTCTGCAGCTGAAGTGACTTATGAGGGTGACGAGAACTTTG
TTGATGATGGGATTCAGATCGATCCCTTTAATCTGGATAAGGAGAGGGAA
GAAGGTTATTTTGATGCACAGGGAAATTTTGTTGAGTATGTCAACGAAAA
TGAAATCAAGGATGCATGGCTTGATAGTCTTGAAGTTGATCAAAGATATG
TTGGTACTGCAGTAATAGACAATAAAGTTATTGAGGCGCAGGAAGATAAA
GATAATGATCATGAACTTTCTTCTGAAGAACTTGGAGTGATAAAGAGGCG
TATTGCCAACATTCTTGAGCCAGGAGAAACAGTTACACAAGCTCTGAGAA
GGCTGAAGGGAACTTCAAACAAGAAGGCAAAGATGTCGGCTGAGACAAAG
CGCGTATTTGATCAGTTAACTGAGGATGCCATGAGGCTGATGGAAGAGAA
TGGAGAATATAATGTGTACCACGAGAACCGGGAGACTTTTGAGCGTGAGG
CAGAAGGATATGAGAGGTTAGNNNAGTCAAAGNNAAAGGCTGATGCGTAT
GATATGTTTGC
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