CK935155

Overview
NameCK935155
Unique NameCK935155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935155_ssr34 microsatellite CK935155_ssr34:34..55. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935155_ssr164 microsatellite CK935155_ssr164:164..175. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1768 contig Csv1_Contig1768:1..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.121e-80
Identity = 155/225 (68.89%), Postives = 180/225 (80.00%), Query Frame = 1
Query:  223 MSSSTPAALSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLG---HPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQ--EIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMI-KDGFFAP-AANVGVTPY 876
            MSS + A  SPDH S S+ LCYV C FC T+LAV+VP TSLFKTVTVRCG CTNLLSVNMR  +LPA+NQL L    H +F PQ++LEE+R+ P+NM M+        + +P  +  HQ  EIPK+P VNRPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL+P +QPVKKT++  QQEGED M+ K+GF+AP AANVGVTPY
Sbjct:    6 MSSPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNM-PQQEGEDNMVMKEGFYAPAAANVGVTPY 229          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.783e-74
Identity = 153/235 (65.11%), Postives = 177/235 (75.32%), Query Frame = 1
Query:  223 MSSSTPAALSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSV--NMRGLLLPAANQLHLGHPFFTPQ------NLLEEIR----NVPANMLM---INPPNPADQSVMPVR---VVDH-QEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMI-KDGFFAPAANVGV 867
            MSSS+  A  PDH SS++QLCYVHC+FCDTVLAVSVP +SLFKTVTVRCGHC+NLLSV  +MR LLLP+ +  +LGH F  P       NLLEE+R    N+  NM+M    +  +P +  VM  R    VDH QE+P+ P  NRPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM    P KK +VR QQEGED M+ ++GF+  AANVGV
Sbjct:    6 MSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVS--NLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVR-QQEGEDGMMGREGFYGSAANVGV 237          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.270e-65
Identity = 144/255 (56.47%), Postives = 168/255 (65.88%), Query Frame = 1
Query:  226 SSSTPAALSPDHL---SSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA-----ANQLHLGHPFFTPQN---LLEEIRNVPANMLMINPPNPADQSVM-----------------PVRVVDHQ-EIPKSPVV--NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMIKDGFF-------APAANVGVTPY 876
            SSS+ A    DHL   S +EQLCYVHC  CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA     ANQLH G    +P +   LL+E+     ++LM    + +  S+                  P + V  + E+PK+     NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMP DQ  KKT  + Q   ED ++KD  +       A AAN+GVTP+
Sbjct:    4 SSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMP-DQGFKKT-FKPQDGSEDILLKDSLYAAAAAAAAAAANMGVTPF 256          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.270e-65
Identity = 144/255 (56.47%), Postives = 168/255 (65.88%), Query Frame = 1
Query:  226 SSSTPAALSPDHL---SSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA-----ANQLHLGHPFFTPQN---LLEEIRNVPANMLMINPPNPADQSVM-----------------PVRVVDHQ-EIPKSPVV--NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMIKDGFF-------APAANVGVTPY 876
            SSS+ A    DHL   S +EQLCYVHC  CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA     ANQLH G    +P +   LL+E+     ++LM    + +  S+                  P + V  + E+PK+     NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMP DQ  KKT  + Q   ED ++KD  +       A AAN+GVTP+
Sbjct:    4 SSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMP-DQGFKKT-FKPQDGSEDILLKDSLYAAAAAAAAAAANMGVTPF 256          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.349e-62
Identity = 140/267 (52.43%), Postives = 164/267 (61.42%), Query Frame = 1
Query:  223 MSSSTPAALSPDHLSS-----------SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAA----NQLHLGHPFFTPQN---LLEEIRNVPA-----------NMLMINPPNPADQSVMPVRVV----------DHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQ-EGEDAMIKDGFFAPAA---------NVGVTPY 876
            M SS P   S DHLS             EQLCYVHC FCDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPAA    NQL  G    +P +   LL+E+ +  A           N+  I   N +  +  P   +          + Q+   +P  NR  EKRQRVPSAYNRFIKDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGLMP DQ +KKT ++ Q   GE  + KDG +A AA         ++GVTP+
Sbjct:    1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMP-DQGLKKTGIQSQDGAGECMLFKDGLYAAAAAAAAATAASSMGVTPF 266          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 2.349e-62
Identity = 140/267 (52.43%), Postives = 164/267 (61.42%), Query Frame = 1
Query:  223 MSSSTPAALSPDHLSS-----------SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAA----NQLHLGHPFFTPQN---LLEEIRNVPA-----------NMLMINPPNPADQSVMPVRVV----------DHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQ-EGEDAMIKDGFFAPAA---------NVGVTPY 876
            M SS P   S DHLS             EQLCYVHC FCDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPAA    NQL  G    +P +   LL+E+ +  A           N+  I   N +  +  P   +          + Q+   +P  NR  EKRQRVPSAYNRFIKDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGLMP DQ +KKT ++ Q   GE  + KDG +A AA         ++GVTP+
Sbjct:    1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMP-DQGLKKTGIQSQDGAGECMLFKDGLYAAAAAAAAATAASSMGVTPF 266          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.687e-58
Identity = 133/259 (51.35%), Postives = 155/259 (59.85%), Query Frame = 1
Query:  265 SSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQL-----------------HLGHPF-FTPQN------LLEEIR--NVPANMLMI---------------NPPNPADQSVMPVRVVDHQEIPKSP-------VVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTS-VRQQQEGEDAMIKDGFF------APAANVGVTPY 876
            S  EQLCYVHC +CDTVL VSVP +SLF+TVTVRCGHC++LL+VNMRGLLLP                      H  H     P N      LL+EI   N P  +L+                N  +PA  +  P      +   K P       V+NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMP  Q +KKTS + Q  + +D ++K+G +      A AAN+GV PY
Sbjct:   55 SEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKKTSLLPQDHQRKDGLLKEGLYAAAAAAAAAANMGVAPY 313          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.209e-44
Identity = 96/165 (58.18%), Postives = 112/165 (67.88%), Query Frame = 1
Query:  268 SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 762
            ++EQLCY+ C FC+ +LAV+VPC+SLF  VTVRCGHCTNL SVNM      AA    L  P F   N       VP         +    + +P R+   + I +  +VNRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct:    7 ATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNM------AAALQSLSRPNFQATNYA-----VPEY-----GSSSRSHTKIPSRI-STRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 154          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.870e-43
Identity = 97/195 (49.74%), Postives = 119/195 (61.03%), Query Frame = 1
Query:  262 LSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL--LPAANQLH----------------LGHPFF--TPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKK 786
            ++ +EQ+CYVHC FC+T+LAVSVP  S+   VTVRCGHCTNLLSVN+RGL+   PA    H                 G+P F  +  +   ++R  PA   M++      Q    +               RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAH+P+IHFGL P  +  KK
Sbjct:    5 IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHA-------------RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEGGKK 186          
BLAST of CK935155 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.067e-42
Identity = 93/165 (56.36%), Postives = 113/165 (68.48%), Query Frame = 1
Query:  268 SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMR-GLLLPAANQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 759
            SSE++CYVHC+FC T+LAVSVP  SLF  VTVRCGHCTNLLS+N+   L   +A  +H           L+  R    +++       + +S   +     +E P+ P + RPPEKRQRVPSAYNRFIK+EIQRIKA NP+ISHREAFS AAKNWAHFPHIHFGL
Sbjct:    6 SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQD---------LQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 160          
The following BLAST results are available for this feature:
BLAST of CK935155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB1_ARATH1.121e-8068.89Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]
YAB3_ARATH7.783e-7465.11Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB4_ORYSJ2.270e-6556.47Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI2.270e-6556.47Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB5_ORYSJ2.349e-6252.43Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI2.349e-6252.43Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB3_ORYSJ2.687e-5851.35Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ARATH2.209e-4458.18Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB6_ORYSJ1.870e-4349.74Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB2_ARATH2.067e-4256.36Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004177_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935155 ID=CK935155; Name=CK935155; organism=Citrus sinensis; type=EST; length=877bp
GGGGAATGTGTTCTTCCCGTACTATATTAGTGGTCTCTCTCTCTCTCTCT
CTCTCATTCTCTATTTCTTCTTCCTCTTCTTTATATCTATAGTACTTAAC
AATCAAGAAGATCAGAACAAGTTGGGATTTTATCATCCCATCAGTCCACT
GATCAGTCAGTCCATCAATCAATCAAATCAAAACTAAAAAAATTAAAGAA
TCAGGATAATCAAAGAAACAGGATGTCATCCTCAACACCTGCTGCTTTGT
CACCGGACCATCTCTCTTCCTCCGAGCAGCTCTGTTACGTCCACTGCACC
TTTTGCGACACTGTCCTCGCGGTGAGTGTTCCTTGCACTAGTTTGTTCAA
GACTGTGACGGTTCGCTGCGGCCATTGCACCAATCTTTTGTCTGTGAACA
TGCGCGGCCTGCTGCTTCCTGCAGCTAATCAGCTTCATCTGGGTCATCCT
TTCTTCACTCCTCAGAATCTTCTGGAGGAGATCCGAAATGTGCCAGCTAA
TATGCTGATGATCAATCCGCCAAATCCAGCTGATCAATCTGTTATGCCTG
TTCGAGTAGTTGATCATCAAGAGATCCCTAAGTCTCCTGTTGTTAACAGA
CCTCCAGAAAAGAGACAGAGAGTCCCATCTGCCTACAACCGCTTCATCAA
GGACGAGATCCAACGCATCAAAGCTGGAAATCCTGATATAAGCCACAGAG
AGGCCTTTAGTGCCGCTGCCAAAAATTGGGCCCACTTCCCTCACATCCAT
TTCGGACTTATGCCATCTGATCAGCCCGTGAAGAAAACTAGCGTGCGCCA
GCAGCAGGAGGGAGAGGACGCGATGATAAAGGATGGTTTCTTTGCTCCTG
CCGCAAATGTTGGTGTCACTCCTTACT
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