CK935170

Overview
NameCK935170
Unique NameCK935170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5696 contig Csv1_Contig5696:76..424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935170 vs. ExPASy Swiss-Prot
Match: SYP71_ARATH (Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.663e-23
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   26 MSVXDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLA 298
            M+V D++TRVD+IC            E N+ GDDAFARLYG  +  ++ AL+K+E    EKNRA AVAMNAEIRRTKARL EEV KLQRLA
Sbjct:    1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKEKNRAAAVAMNAEIRRTKARLSEEVPKLQRLA 91          
BLAST of CK935170 vs. ExPASy Swiss-Prot
Match: SYP72_ARATH (Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.059e-20
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   26 MSVXDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLA 298
            M V D+I RVD IC            E+   GDDAF+RL+  + +D++A L+K+E A+TEKNRA AVAMNAE+RRTKARL E+V KLQ+LA
Sbjct:    1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTEKNRAAAVAMNAEVRRTKARLAEDVVKLQKLA 91          
BLAST of CK935170 vs. ExPASy Swiss-Prot
Match: SYP73_ARATH (Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 2
Query:   26 MSVXDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLA 298
            M V DLITRVD+IC            + NV GDDAF+RLY  V+  L+  LQK+E  ++E N+A AVAMNAEIRRTKARLLE + KLQRL+
Sbjct:    1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSETNKAKAVAMNAEIRRTKARLLEGIPKLQRLS 91          
The following BLAST results are available for this feature:
BLAST of CK935170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP71_ARATH8.663e-2359.34Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 ... [more]
SYP72_ARATH1.059e-2054.95Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 ... [more]
SYP73_ARATH1.806e-2057.14Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_A05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935170 ID=CK935170; Name=CK935170; organism=Citrus sinensis; type=EST; length=349bp
GGGGGGGAGAAAATCAAAAGAGAAAATGAGTGTGNNAGATTTGATCACAA
GAGTCGACGCGATTTGCAAGAAATATGACAAGTACGATGTCGATAAACAA
AAAGAGCTCAACGTCTACGGCGACGACGCTTTCGCTCGCCTGTACGGCGT
CGTTCAGGCCGACCTCGACGCTGCTCTGCAGAAATCGGAGGCGGCAGCAA
CAGAGAAAAATCGTGCGACGGCAGTTGCGATGAACGCGGAGATACGAAGA
ACAAAAGCTAGGTTGCTTGAAGAAGTGGCTAAATTACAAAGACTTGCTTT
TAAAAAGGTAAAAGGGCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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