CK935171

Overview
NameCK935171
Unique NameCK935171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3375 contig Csv1_Contig3375:251..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935171 vs. ExPASy Swiss-Prot
Match: FB92_ARATH (F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.261e-27
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:   29 GDPIYDVIPIHLDIFRGDSSLFKQFLESYKLPLVR-RMQQHG------SGGGKFSRLSYHAMCYCILHDDNVLGTIFSTWKELRTAKSWEEVEMTVWGELNNY 316
            GDPI D+IPI+LD+FRGD+ L K+ LE+Y LPL+R R  ++G      S   K    SY  MCYCILH++NVLG+IFS W ELRTA+SWE+VE TVW  LN Y
Sbjct:  847 GDPICDLIPIYLDVFRGDADLLKKLLENYGLPLIRSRSSENGTTKTADSTRKKVLSPSYRTMCYCILHEENVLGSIFSIWDELRTAESWEQVEQTVWSLLNTY 949
The following BLAST results are available for this feature:
BLAST of CK935171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB92_ARATH2.261e-2758.25F-box protein At1g78280 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_A06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935171 ID=CK935171; Name=CK935171; organism=Citrus sinensis; type=EST; length=546bp
GGGAATTGATTTTAGTAATCTTTCTATCGGTGATCCCATTTATGATGTGA
TCCCTATACATTTAGATATCTTTAGAGGTGACTCTTCTCTCTTTAAGCAA
TTTTTAGAAAGTTACAAACTTCCTTTAGTGAGAAGAATGCAACAGCATGG
ATCAGGAGGCGGCAAGTTTTCACGACTTTCATACCATGCAATGTGCTACT
GCATTTTGCATGACGATAATGTATTGGGAACTATTTTCAGTACATGGAAA
GAACTCAGGACGGCTAAGTCGTGGGAAGAAGTTGAGATGACAGTATGGGG
AGAACTCAATAACTACAAGGGCTACGTTTGATCATTTTTGCATTTGTCAT
TCATTTATTTGAAGCCTTGATTTGTGCCTATTCAAGTTCCATGTTTAACT
TACGGAAATCCCTCATCTTTTTCGTCACTAATTTTCTCTTGTAATAAGCT
TTGGGGTATGTATGGGATTGCTTTGATTCTCAATTAATCGCTTTTAAATT
AGATTTCATAATAATAAACTTTTTAAAGTAATTCATAAAAAAAAAA
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