CK935172

Overview
NameCK935172
Unique NameCK935172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length330
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935172 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.167e-36
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    4 VNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVRKSS 282
            VNIQIEGIE GATITWDIVVGGWDLEYSAEFVPNAE SY I VEKP+K+  ++EA+ NSFT+ EAGKL+LSVDN+ SR++KVAAYRY VRKS+
Sbjct:  314 VNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDEAVCNSFTTVEAGKLILSVDNTLSRKKKVAAYRYTVRKST 406          
BLAST of CK935172 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.848e-18
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   10 IQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVRKSS 282
            I+I   E   T+ WDI V GW++ Y  EFVP  EG+YT+ V+K +K+  +E  IRNSF + +AGK+VL+VDN S +++KV  YRY  +  S
Sbjct:  449 IEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMGANEGPIRNSFKNSQAGKIVLTVDNVSGKKKKV-LYRYRTKTES 538          
BLAST of CK935172 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.259e-14
Identity = 34/78 (43.59%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   43 ITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEE-AIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVR 273
            + W+I V GW++ Y AEFVP  + +YT+ ++KPRK+ PS+E  + +SF   E GK++L+VDN +S+++K+  YR+ V+
Sbjct:  412 LVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDNPTSKKKKL-VYRFNVK 488          
BLAST of CK935172 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   40 TITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEE-AIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVR 273
            TI W+I V GW++ Y AEFVP  +  YT+ ++KPRK++   E  + +SF   E G+++L+VDN +S  +K+  YR+ V+
Sbjct:  586 TIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLTVDNPTS-TKKMLIYRFKVK 663          
BLAST of CK935172 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.875e-12
Identity = 31/73 (42.47%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   34 GATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEE-AIRNSFTSKEAGKLVLSVDNSSSRRRKV 249
            G+T++W++ V G D+ Y A+F P+ E SYT+ V K RK+  ++E  I +SF + EAGK+V+++DN + +++KV
Sbjct:  603 GSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQTFKKKKV 675          
BLAST of CK935172 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.875e-12
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   10 IQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKI-SPSEEAIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRY 264
            I++   EA  T++W++ V G D+ Y A+F P  EGSY + V K RKI S  E  I +SF   E GK+V+++DN +S+++KV  YR+
Sbjct:  487 IELPASEA-CTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQTSKKKKV-LYRF 570          
The following BLAST results are available for this feature:
BLAST of CK935172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL6_ARATH5.167e-3677.42Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
PATL4_ARATH2.848e-1847.25Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL3_ARATH3.259e-1443.59Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH5.203e-1241.77Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL2_ARATH8.875e-1242.47Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL1_ARATH8.875e-1243.02Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_A07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935172 ID=CK935172; Name=CK935172; organism=Citrus sinensis; type=EST; length=330bp
GGGGTTAACATACAGATTGAGGGCATTGAGGCTGGTGCAACAATTACATG
GGACATTGTTGTTGGAGGCTGGGACTTGGAGTACAGTGCAGAATTTGTGC
CAAATGCTGAAGGCAGCTACACAATTGCTGTTGAAAAACCCAGAAAAATT
TCACCCTCTGAAGAAGCAATTCGCAACTCCTTTACATCGAAAGAAGCAGG
CAAATTGGTTCTTTCCGTCGATAACTCTTCTTCCCGGAGAAGAAAGGTCG
CTGCTTATCGTTACATTGTCCGCAAATCCTCCCTGGTTTAGGTGTAATAC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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