CK935177

Overview
NameCK935177
Unique NameCK935177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935177_ssr38 microsatellite CK935177_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935177_ssr71 microsatellite CK935177_ssr71:71..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.410e-23
Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = 2
Query:  245 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP 688
            +  GD G    L E+ V M C+ CVDAV + L+   GV+NVEV L NQ+V +  + P + +   LE TGR+A L G G  +   + AAVA  +G   V GVVR  Q++ EL  IE    GL PG HG  ++++GDLTK   S G  +NP
Sbjct:    3 SKSGDGGTMCAL-EFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLKNLGAAVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNP 150          
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.156e-22
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  245 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKG-PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP 688
            +  GD G    L E+ V M C+ CVDAV + L+ V GV+NV+V L NQ+V +  + P + +   LE TGR+A L G G  +   + AAVA  +G   + GVVR  Q++ EL  IE    GL PG HG  ++++GDLT+   S G  +NP
Sbjct:    3 SKSGDGGTVCAL-EFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLQNLGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNP 150          
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.192e-22
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 2
Query:  245 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP 688
            +  G+QG    L E+ V M C+ CVDAV++ LQ V GV++VEV L +Q+V +  + P + +   LE TGR+A L G G  +   + AAVA   GP  V GVVR  Q+  E   IE    GL PG HG  ++++GDLT    S G  +NP
Sbjct:    3 SDSGNQGTLCTL-EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNP 150          
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21
Identity = 59/138 (42.75%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  278 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP 688
            + E+ V M C+ CVDAV + LQ V G+++VEV L NQ+V +  + P + +   LE TGR+A L G G      + AAVA   G   V GVVR  Q+  E   IE    GL PG HG  +++FGDLT+   S G  +NP
Sbjct:   13 MLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQAVLKGMGSGRWQNLEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNP 150          
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS1_ASHGO (Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii GN=CCS1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.287e-14
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 2
Query:  287 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFK-----GPDVFGVVRLAQVNMELARIEANFSGL-SPGKHGWSINEFGDLTKGAVSTGRVYN 685
            Y V M C  C   + + L+ V GV+ V  DL  Q+V + G +P  ++ +AL  TGR A L G G P+    SAAVA  +     GP V G+VR  QV       +   +GL  P ++  SI   GD+++GA STG  ++
Sbjct:   12 YAVPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRDAILRGSGEPD----SAAVAILESASAGGPPVRGLVRAVQVAPNKTLFDITLNGLPGPAQYYASIRASGDVSRGAASTGPAWH 146          
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS1_DEBHA (Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii GN=CCS1 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 45/141 (31.91%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  287 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGPD-------VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP 688
            + V M+C+ CVD+V   L+++ G+   ++DL + +V   GS P   + +A++ TG+ A + G G P     SAAV   +  D       V G+ R+  V      ++   +GL  G +  SI + G+L+KGA+STG  + P
Sbjct:    9 FAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDAIIRGTGAPN----SAAVCILESFDPKDIQQPVKGLARIVSVGANDLVVDLTVNGLPQGVYYPSIRKSGNLSKGALSTGECFYP 145          
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS1_YARLI (Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica GN=CCS1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 41/137 (29.93%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  281 TEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPED---FLVSAAVAEFKGPDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVY 682
            T + V ++CE C D+VKQ L  V G+++V+  L +Q++ + G+S    + +A++  G+ A + G G P      ++ +   E +   + G+ R+  V+  LA I+   +GL  G +  SI   GD++    S G VY
Sbjct:    5 TTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKDAIVRGTGQPNSAAVCILESHAPEDQAQPIKGLARIVSVSKTLALIDITLNGLPKGTYYPSIRTSGDISDAPQSLGGVY 141          
BLAST of CK935177 vs. ExPASy Swiss-Prot
Match: CCS1_KLULA (Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis GN=CCS1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.506e-12
Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  287 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP---DVFGVVRLAQVNMELARIEANFSGL-SPGKHGWSINEFGDLTKGAVSTG 673
            Y V+M CE C + +++ L+ V G+KNV  D+ + ++ + G +    +  AL+  GR   + G G P    VS       GP    V G+VR+ +V  +    + N +G+  PG +  S+   GDL++G  STG
Sbjct:   13 YAVEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALKNCGRDGIIRGTGKPNSAAVSILGQYTTGPFENTVKGLVRIVEVAQKKTFFDINLNGVEKPGLYYASVRASGDLSEGVKSTG 145          
The following BLAST results are available for this feature:
BLAST of CK935177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCS_RAT7.410e-2342.95Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_MOUSE2.156e-2241.61Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS_HUMAN8.192e-2242.28Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_PIG1.070e-2142.75Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS1_ASHGO6.287e-1436.69Superoxide dismutase 1 copper chaperone OS=Ashbya ... [more]
CCS1_DEBHA1.072e-1331.91Superoxide dismutase 1 copper chaperone OS=Debaryo... [more]
CCS1_YARLI9.079e-1329.93Superoxide dismutase 1 copper chaperone OS=Yarrowi... [more]
CCS1_KLULA4.506e-1231.58Superoxide dismutase 1 copper chaperone OS=Kluyver... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004177_A12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DA0001_IIF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935177 ID=CK935177; Name=CK935177; organism=Citrus sinensis; type=EST; length=825bp
GGGGATTCTGAGGACAGTGGCAACGTTAGCAACAGCCACAACAACAACAG
CAGTAGCGGCCTTTGCCTTCTCTTCTTCTTCTTCTTTTACGTCAAAATCT
CATCAACCCAAATCCCAAAATCTCTCCTTTTTCTCTTCACAATCTCTCTC
ACTTCTCTATTCAAATAAATCGCCTCTTGTCAAAAACTTCAGCAACCCAC
CTTCCGCTCTTCCCATGGACGCTCCCACATCTGATCACAAAAACACATCC
CAGGGGGATCAGGGGTTGCCTGAGCTTCTGACAGAATACATGGTGGACAT
GAAGTGTGAGGGTTGCGTTGATGCCGTCAAGCAGAAGTTGCAGACTGTTA
CTGGAGTCAAGAATGTTGAGGTGGACTTGAGCAATCAAGTTGTGAGAATT
TTGGGATCTTCACCTCTGAAGACCATGACCGAAGCTTTGGAGCAAACGGG
ACGAAAAGCCCGGTTAGTTGGACAAGGGGTGCCTGAAGATTTTTTAGTCT
CCGCTGCCGTTGCTGAATTCAAAGGTCCAGATGTATTTGGTGTGGTTCGC
TTGGCTCAAGTGAATATGGAATTGGCTAGGATTGAAGCCAACTTTAGTGG
GCTTTCACCTGGAAAACATGGCTGGTCTATTAATGAATTTGGTGATCTGA
CAAAAGGTGCAGTGAGCACTGGCAGAGTTTATAATCCAAAGATTGAAGGA
AGTGCGAAAGAGGCAGTGCTGCACTGGTTTACATCTTCCCAATGATTTTG
CAATGGCATTTTCTAACCGGGTTGCTTGATTTTATCAGCCACTTGGTGAC
CTGGGAACAGTAGTTGCTGATGAGA
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