CK935242

Overview
NameCK935242
Unique NameCK935242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935242_ssr826 microsatellite CK935242_ssr826:826..839. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9272 contig Csv1_Contig9272:1..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.193e-18
Identity = 45/61 (73.77%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPT 288
            EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                GAKAKTNFPT
Sbjct:   22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPT 82          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 297
            E+ +RGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                G+KAKTNFP P E
Sbjct:   30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGE 93          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 297
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP+P E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTE 87          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 297
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP P+E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSE 87          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.547e-17
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 291
            E+ YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNFP+P
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  109 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPN 294
            +RYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                GAKAKTNFP  N
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYN 79          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.236e-16
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 291
            EIR+RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+                G KAKTNFP P
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.450e-16
Identity = 41/59 (69.49%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 282
            EIRYRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNF
Sbjct:   28 EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.365e-14
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            EIR+RGVRKRPWGR+AAEIRDP KK RVWLGTFD+                G KAKTNFP
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.970e-14
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            E RYRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAKTNFP
Sbjct:   24 EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
The following BLAST results are available for this feature:
BLAST of CK935242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERF78_ARATH1.193e-1873.77Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF80_ARATH7.731e-1865.63Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC7.731e-1865.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY1.010e-1765.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF81_ARATH8.547e-1766.13Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH4.242e-1666.13Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF3_TOBAC7.236e-1664.52Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF79_ARATH9.450e-1669.49Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF82_ARATH1.365e-1463.33Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF83_ARATH3.970e-1463.33Ethylene-responsive transcription factor 7 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_C06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935242 ID=CK935242; Name=CK935242; organism=Citrus sinensis; type=EST; length=864bp
GGGGCTTCAAGAGCTCACTAACAACTTGCTCCTCTGTTCAAAATGNNNNC
GAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGAAGG
ATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTTAC
GCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGCAC
CTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCGTG
AGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAATC
CTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCATC
CTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACAGC
TAAACCTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAGTC
GCCACGGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGTAC
TGTTGCGACTCACCGTGATGCACGCTGTGTTGGTTTTTATCCCGGCGGGA
CCCAGAGCGACTCCGATTCGTCATCGGTCGTCGTTGATTACGATCCTCGT
TCGTCTGAGAGAAGATTGATTGATCTTGATCTTGATCTTAATCTCCCTCC
TCCACCTGAAGTGGCTTGAGTTTTTGGACTGAAGCTAATGCTGACGTGTA
CGGCGATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCGAT
CTTCGTATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCACG
TTGTTTTTAACTGCTGCCGTTAGAAATATATATATATATGTGTTTAATGC
TTAGTCAAATGATA
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