CK935275

Overview
NameCK935275
Unique NameCK935275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5839 contig Csv1_Contig5839:409..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.570e-16
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 127
            +GKRPENAGKLIAVVFPSFGERYLSS+LFQSIREECENM+P
Sbjct:  342 IGKRPENAGKLIAVVFPSFGERYLSSILFQSIREECENMKP 382          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.619e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 127
            V KRPENAGKLIAVVFPSFGERYLSS+LFQSIREECE M+P
Sbjct:  332 VAKRPENAGKLIAVVFPSFGERYLSSILFQSIREECEKMKP 372          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.126e-14
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 127
            VGKRPENAGKLI VVFPS+GERYLSS+LFQSIREECE M+P
Sbjct:  344 VGKRPENAGKLIGVVFPSYGERYLSSILFQSIREECEKMKP 384          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.508e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 127
            V KRPENAGKLIAVVFPSFGERYLS+ LFQSIREECE MQP
Sbjct:  350 VAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQMQP 390          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.621e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 127
            V KRPENAGKLIAVVFPSFGERYLS+ LFQSIREE E MQP
Sbjct:  388 VAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQP 428          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQPGP 133
            V KRPENAGKLI V+FPSFGERYLSSVLF+++R E ENM   P
Sbjct:  283 VAKRPENAGKLIVVIFPSFGERYLSSVLFETVRREAENMTVEP 325          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.426e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQPGP 133
            + KRPENAGKL  VVFPSFGERYLSSVLFQSI++E E+M   P
Sbjct:  283 LAKRPENAGKLFVVVFPSFGERYLSSVLFQSIKKEAESMVVEP 325          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.781e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 121
            V KRPENAGKLI  VFPSFGERYLSSVLF S+R+E E+M
Sbjct:  283 VAKRPENAGKLIVAVFPSFGERYLSSVLFDSVRKEAESM 321          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.861e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 121
            + KRPENAGKLI  VFPSFGERYLS+VLF+S++ E ENM
Sbjct:  283 IAKRPENAGKLIVAVFPSFGERYLSTVLFESVKRETENM 321          
BLAST of CK935275 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.861e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    5 VGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 121
            V +RPEN GKL+ VVFPSFGERYLSSVLF+SI+ E ENM
Sbjct:  283 VAQRPENKGKLVVVVFPSFGERYLSSVLFESIKREAENM 321          
The following BLAST results are available for this feature:
BLAST of CK935275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CYSKP_SPIOL4.570e-1692.68Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_CAPAN8.619e-1590.24Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU1.126e-1487.80Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_ARATH2.508e-1490.24Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH3.621e-1387.80Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSK_SOLTU6.829e-1274.42Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_MAIZE4.426e-1174.42Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK_SPIOL5.781e-1179.49Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_CITLA9.861e-1174.36Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK2_ORYSJ9.861e-1176.92Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004563_H01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935275 ID=CK935275; Name=CK935275; organism=Citrus sinensis; type=EST; length=357bp
GGGGGTTGGGAAGAGACCTGAGAATGCTGGAAAGCTTATTGCAGTTGTGT
TTCCGAGCTTTGGAGAACGATACCTCTCATCCGTTCTTTTCCAGTCAATC
CGAGAAGAATGTGAGAACATGCAGCCTGGGCCGTGAAATTCAACTCTTCG
AGATTTATTGAAAATGCAAAGCTTATTTTTCTGTCTTCCATACACATTGG
CATACATTTTGCTTTTGTTTTAGTCAGTATCTTCTGTTTTTGTGTACATC
CACTTGTAGGATCCTAATTATAGTTATGTCCATTCATGACTGTTAAATCC
TTTTTTAAGAAGGAAAATCCTGTTTTTTGGAATTCATCTAAGGGGTGGAA
TTTGTGA
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