CK935295

Overview
NameCK935295
Unique NameCK935295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_KLULA (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  107 SYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFLDNKSKEKLEPSKQQPVAV 346
            +YD+VEIEDM ++ + Q +TYPCPCGD FQI+ D++  GE+IA CPSCSL I V+++ ED ++   +  LEP  +  VAV
Sbjct:    3 TYDEVEIEDMTFDPDTQIFTYPCPCGDRFQISIDDMYDGEDIAVCPSCSLMIQVVFDKEDLVEYYVEANLEPPGKIAVAV 82          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_DROME (DPH3 homolog OS=Drosophila melanogaster GN=CG14701 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  110 YDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFLDNKSKE 310
            +D+VEIED E++EE + Y YPCPCGD FQI+K+EL  GEE+A CPSCSL I VIY+ E F   + +E
Sbjct:    5 HDEVEIEDFEYDEEEEMYYYPCPCGDRFQISKEELIEGEEVATCPSCSLVIKVIYDPEMFKAEEDEE 71          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_CAEEL (DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  110 YDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFLDNKSKEKLEP-SKQQPVA 343
            +D+VEIED E++EE   Y YPCPCGD F+I ++ L +GE++A+CPSCSL I VIY+ EDF+      KLE  S  +P+A
Sbjct:    5 HDEVEIEDFEFDEEKDVYHYPCPCGDRFEIPREMLEMGEDVAQCPSCSLLIRVIYDPEDFV------KLETISTSKPIA 77          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_EMENI (Diphthamide biosynthesis protein 3 OS=Emericella nidulans GN=dph3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  110 YDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFLDNKSKE 310
            YD++EIEDM ++  LQ Y YPCPCGD F+I  D+LR GE+IA CPSCSL I VI++  D    + KE
Sbjct:    9 YDEIEIEDMTFDANLQIYHYPCPCGDRFEIAIDDLRYGEDIAVCPSCSLMIKVIFDQSDLPKEEKKE 75          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_ASHGO (Diphthamide biosynthesis protein 3 OS=Ashbya gossypii GN=DPH3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  110 YDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFLDNKSKEKLEP 322
            YD+VEIEDM ++ + Q +TYPCPCGD FQI+ D++  GE+IA CPSCSL I V+Y + D  +   +  +EP
Sbjct:    4 YDEVEIEDMTFDPDTQLFTYPCPCGDRFQISIDDMCDGEDIAVCPSCSLMIKVVYELHDLQEYYDEAGVEP 74          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_CRIGR (DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  101 AMSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFL 292
            A+ +D+VEIED +++E+ + Y YPCPCGD F ITK++L  GE++A CPSCSL I VIY+ + F+
Sbjct:    2 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFM 65          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_PONAB (DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  101 AMSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFL 292
            A+ +D+VEIED +++E+ + Y YPCPCGD F ITK++L  GE++A CPSCSL I VIY+ + F+
Sbjct:    2 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFV 65          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_MOUSE (DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  101 AMSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFL 292
            A+ +D+VEIED +++E+ + Y YPCPCGD F ITK++L  GE++A CPSCSL I VIY+ + F+
Sbjct:    2 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQFM 65          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_MACFA (DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  101 AMSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFL 292
            A+ +D+VEIED +++E+ + Y YPCPCGD F ITK++L  GE++A CPSCSL I VIY+ + F+
Sbjct:    2 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFV 65          
BLAST of CK935295 vs. ExPASy Swiss-Prot
Match: DPH3_HUMAN (DPH3 homolog OS=Homo sapiens GN=DPH3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  101 AMSYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDFL 292
            A+ +D+VEIED +++E+ + Y YPCPCGD F ITK++L  GE++A CPSCSL I VIY+ + F+
Sbjct:    2 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFV 65          
The following BLAST results are available for this feature:
BLAST of CK935295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DPH3_KLULA2.394e-1751.25Diphthamide biosynthesis protein 3 OS=Kluyveromyce... [more]
DPH3_DROME9.098e-1759.70DPH3 homolog OS=Drosophila melanogaster GN=CG14701... [more]
DPH3_CAEEL1.188e-1653.16DPH3 homolog OS=Caenorhabditis elegans GN=K01H12.1... [more]
DPH3_EMENI4.515e-1656.72Diphthamide biosynthesis protein 3 OS=Emericella n... [more]
DPH3_ASHGO4.515e-1652.11Diphthamide biosynthesis protein 3 OS=Ashbya gossy... [more]
DPH3_CRIGR5.897e-1654.69DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV... [more]
DPH3_PONAB7.702e-1654.69DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1[more]
DPH3_MOUSE7.702e-1654.69DPH3 homolog OS=Mus musculus GN=Dph3 PE=1 SV=1[more]
DPH3_MACFA7.702e-1654.69DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 S... [more]
DPH3_HUMAN7.702e-1654.69DPH3 homolog OS=Homo sapiens GN=DPH3 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_E08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935295 ID=CK935295; Name=CK935295; organism=Citrus sinensis; type=EST; length=761bp
GGGGAGAGCACGTATTTATTCTTCCTTTATCCGAGAACAAAACCCTAATC
GGAAAAACCCCCTGAAAAAACAAAACAAAAAATTAAAAAAGAAAAAGAAA
GCGATGTCGTACGACGACGTGGAGATCGAAGACATGGAGTGGAACGAGGA
GTTACAGGCGTACACGTACCCTTGCCCGTGCGGCGATTTATTCCAAATCA
CGAAAGACGAGCTCCGAATCGGCGAGGAAATCGCCCGGTGCCCCAGCTGC
TCTCTGTACATCACCGTTATTTACAACATCGAAGACTTCCTCGACAATAA
ATCAAAAGAAAAGCTCGAGCCTTCGAAGCAACAACCGGTGGCCGTCGCCT
GAAATATTAAACGTTTCAAAGATGATAGCGGTCAGGGTGTGGTTGCAAGA
TGGCGCAATATGTTTTAACTAAGGAACTTTTGTGAGGGAGTCTCAGTAAT
TATTAGTGAGCAATTTTTTGTATCTGACAGGTGATTTTTATAATTTTGTT
ATAGAGGAAACATACTTGCAATAGAGATCTGTCCTACAGGAGTTTTACTG
GTGATTGTCGGCAATTGCATACCAAAGTTTGCCTCTGGGGAGTGATTGTA
ATAAGTTTATTATGTATTTATTATCATAATGTGTTATTGGATGTCCTTTG
AAAGTAGTTGATCACATTAGTAAAACAAATTTTATATATGTGGATCTTGT
ATGGTGATTGAGAGCTCCTTCTGGATTCATATTAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
back to top