CK935303

Overview
NameCK935303
Unique NameCK935303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:59..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 7.103e-81
Identity = 145/157 (92.36%), Postives = 153/157 (97.45%), Query Frame = 1
Query:  310 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLM 780
            LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQRPK+SP+KE  R+NLS+LLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVILLM
Sbjct:   73 LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLM 229          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.699e-80
Identity = 143/157 (91.08%), Postives = 151/157 (96.18%), Query Frame = 1
Query:  310 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLM 780
            L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQRPK+SP+KE  R NL +LLGADP VVNLKAKTHEKVDSLGENRSIAAHTV+LLM
Sbjct:   78 LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 234          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.083e-40
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  316 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLM 780
            FR+G GFD+H  E G PLIIGGI +PHE+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP +K A S+  ++   +++++ GY +GN+D T++ QRPK++PY E  +  ++ELL A+P+ VN+KA T E++   G    IAA   ILLM
Sbjct:    2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQRPKMAPYIEQMQNRIAELLHAEPSQVNVKATTTERLGFTGREEGIAAMATILLM 156          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.083e-40
Identity = 75/150 (50.00%), Postives = 103/150 (68.67%), Query Frame = 1
Query:  310 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAA 759
            LP RVG GFD+H+LE G  L +GGI + H++G   HSD DV LH +VDA+LGA+G  DIG  FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I + P++ P+++     ++ELL   P  +++KA T EK+   G    IAA
Sbjct:  224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAMGQRIAELLATSPDAISVKATTTEKLGFTGRGEGIAA 373          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.945e-40
Identity = 79/153 (51.63%), Postives = 106/153 (69.28%), Query Frame = 1
Query:  319 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILL 777
            R+G G+D+H L PG  LI+GG+++PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+P+      NL+E LG   T  N+KAKT+EK+   G+   I A   +L+
Sbjct:    7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLGLPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLI 159          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sulfurreducens GN=ispF PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.150e-39
Identity = 75/153 (49.02%), Postives = 106/153 (69.28%), Query Frame = 1
Query:  319 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILL 777
            R+GHG+D+HRL  G  LI+GG+++PHE G   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L    G+ +GNLDAT++ QRPK++P+    R +++  L ADP  VN+KA T E++   G    IAA+ V+L+
Sbjct:    2 RIGHGYDVHRLVAGRKLIVGGVDIPHELGLLGHSDADVLLHAISDAILGALALGDIGKHFPDTDPRYKGADSRALLRHVMELATRKGFHLGNLDATIVAQRPKMAPHIPLMREHIAADLMADPDRVNVKATTTEELGFAGRGEGIAAYAVVLM 154          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_BORA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella avium (strain 197N) GN=ispF PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38
Identity = 80/156 (51.28%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  310 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILL 777
            +PFRVG GFD+H L  G PLIIGG+ + H  G   HSD DVLLH V DAILGA GL DIG+ FPD+DP++KGA S V ++EA+  +D AG+++ N+DAT+  Q PK+ P+      N++  LG    +VN+KAKT+E +  LG    IAA  V LL
Sbjct:    3 IPFRVGQGFDVHALVTGRPLIIGGVRIEHSHGLLGHSDADVLLHAVTDAILGAAGLGDIGRHFPDTDPRFKGADSRVLLREAMARVDAAGWQVVNVDATVHAQAPKIGPHAPAMVANIAADLGIAHDLVNIKAKTNEGLGYLGRKEGIAATVVTLL 158          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.498e-38
Identity = 73/153 (47.71%), Postives = 104/153 (67.97%), Query Frame = 1
Query:  319 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILL 777
            R+GHG+D+H  + G  +++GG+ +PH +   AHSDGDVL+H + DA+LGA  L DIG+ FPD+DP +KGA S V ++  V L+ E GY +GN+DAT+I Q PK++P+ E  R NL++ LG     VN+KA T E++   G    IAAH V L+
Sbjct:    5 RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHFPDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLGVALECVNVKATTTERLGFAGREEGIAAHAVALI 157          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.498e-38
Identity = 76/156 (48.72%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  310 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILL 777
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + +AGY +GN+DAT+I Q+PKL+P+      NL+E LG  P   N+KAKT+EK+   G+   I A  V+L+
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQKPKLAPHVPGMVANLAEDLGIAPERCNVKAKTNEKLGFEGKEEGIVAQAVVLI 159          
BLAST of CK935303 vs. ExPASy Swiss-Prot
Match: ISPF_ACIBL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidobacteria bacterium (strain Ellin345) GN=ispF PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.498e-38
Identity = 77/153 (50.33%), Postives = 103/153 (67.32%), Query Frame = 1
Query:  319 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKEXXRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILL 777
            RVG GFD H    G PL IGG+ +PH  G   HSDGDVLLH + DA+LGA+   DIG  FP SDPKWKGA S VFI+EA+R ++ AGY +GN+D +L+L  PK+ P+ +  + ++++LL  +PT V +KAKT E    L  + +  AH V+LL
Sbjct:    3 RVGLGFDSHEFREGIPLRIGGLTIPHTHGLSGHSDGDVLLHAITDALLGAVAAGDIGAFFPPSDPKWKGANSVVFIEEAMRHIETAGYRVGNVDCSLVLNAPKIGPHAKAIQESVAKLLKIEPTAVGIKAKTPE---GLNLDGTALAHVVVLL 152          
The following BLAST results are available for this feature:
BLAST of CK935303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_ARATH7.103e-8192.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CATRO2.699e-8091.082-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LYSSC6.083e-4050.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_ERYLH6.083e-4050.00Bifunctional enzyme ispD/ispF OS=Erythrobacter lit... [more]
ISPF_RALME7.945e-4051.632-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOSL5.150e-3949.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORA11.147e-3851.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THISH1.498e-3847.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALPJ1.498e-3848.722-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACIBL1.498e-3850.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_D06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935303 ID=CK935303; Name=CK935303; organism=Citrus sinensis; type=EST; length=780bp
GGGGGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGC
GTCTCCCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAAT
CATACACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGT
CCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCG
CACAACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCA
TTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAA
TCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATT
GGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGA
GAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTG
GATGCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCC
TGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAG
AAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGAT
GCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGANNNN
CCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATC
TGAAAGCGAAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGT
ATTGCAGCTCACACTGTGATCCTTCTCATG
back to top