CK935308

Overview
NameCK935308
Unique NameCK935308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935308_ssr374 microsatellite CK935308_ssr374:374..385. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1817 contig Csv1_Contig1817:14..510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935308 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.002e-33
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 2
Query:   50 MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVHKKGKPKCP 313
            MKL   T+++ +L+++ SL++   AGS FCDSKC  RC +AG+ DRCLKYCGICCE+CKCVPSGTYGNKHECPCYRDK + KGK KCP
Sbjct:    1 MKLFLLTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CK935308 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 2
Query:  137 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVHKKGKPKCP 313
            C  KC  RC +   +  C+ +C  CC  C CVP+GTYGNK  CPCY +   K+G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CK935308 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.716e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  137 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVHKKGKPKCP 313
            C  +C  RC     +  C+ +C  CC  C CVP G YGNK  CPCY +   ++GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CK935308 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  137 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVHKKGKPKCP 313
            C S+C  RCK+      C+ +C  CC  C CVP G YGNK  C CY +   ++G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CK935308 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 2
Query:  137 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVHKKGKPKCP 313
            C  +C +RC ++     CL+ C  CC  C CVP GT GN H CPCY       G+ KCP
Sbjct:   41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CK935308 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 2
Query:  137 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVHKKGKPKCP 313
            C  +C  RC ++   + CL+ C  CC  C CVP GT GN H CPCY     + G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of CK935308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SNAK1_SOLTU1.002e-3367.05Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC2.320e-1449.15Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC5.716e-1345.76Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH1.663e-1245.76Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA2_ARATH1.408e-1144.07Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH1.839e-1144.07Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_C01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935308 ID=CK935308; Name=CK935308; organism=Citrus sinensis; type=EST; length=496bp
GAGGCAATCAATCCTACTACTAAAGTCACTTGAAAGGAAAGCAGAAAAAA
TGAAGCTTCACTTTACAACTGTTGTTGTTTGCTCTCTTATCCTCAGCTTC
TCTCTCTTGGAGCCTGCCACGGCTGGATCACCCTTTTGTGACAGCAAGTG
TGCGGAAAGGTGCAAGCAAGCAGGAGTGCAGGACCGGTGCTTGAAGTACT
GCGGGATATGCTGTGAGGACTGCAAGTGTGTGCCTTCTGGGACTTACGGA
AACAAGCATGAGTGCCCTTGCTACAGGGACAAGGTTCACAAGAAGGGGAA
GCCCAAGTGCCCTTGAATTTCGAAACCGCATCAAAATTCAAATGCATCTG
CTTTAATTATGTTCTGTAAACAGTATTATTATTATTGGTAGTATTATATT
ATGATGGTGGTGGAATGTTAATGCACTTATATTATTCTTAAATAATAAAA
GCTATTTCTCTTGGTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top